Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2744 167 3e-36
seq413 122 1e-22
seq1565 100 3e-16
>seq2744
Length=396707
Score = 167 bits (184), Expect = 3e-36
Identities = 165/213 (77%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420
|||||| || || || | || ||| |||||||||||||||| |||||| || ||||||||
Sbjct 260661 TATGTAAGTTTCAATGAGCAAAGAGTACATTTCAGAATGGATATTCTCTATGGCAATTTG 260602
Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480
||| ||||||||||| | ||||| | ||| | |||||| ||| || ||||| | ||
Sbjct 260601 GAAGCCGTAGAAACAACGTGCTTCGGCGATTTTCACTTCCTGACTGAACCTCTCAATCAG 260542
Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540
||| |||||||| ||||||||||| || || || || ||||| | ||| |||||||
Sbjct 260541 ATTCTCATTGACGATACCATCGGAAGCGGCGAAGAATGCCAAGACATGAGAGATAAAATA 260482
Query 93541 TTTCTCATCATCTTTAAGCTT---ATCCCAATC 93570
||||||||| || ||||| |||||||||
Sbjct 260481 TTTCTCATCGGAATTCAGCTTTTCATCCCAATC 260449
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173
||||||||||||| || | || ||||| || || | ||||| | | |||||||||||
Sbjct 261024 CTTCGTCTCGTGAGATGAGTTCGTTGCTAAAAGTGAGGCCTGGCATGACTCCTCGTTTCT 260965
Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233
| |||||||| || | |||||||| || ||||| ||||| || || || || ||||
Sbjct 260964 TCAGCCAAAAGATAGCCGCAAAACTGCCGCTGAAAAAAATACCCTCGACTGCCGCGAATG 260905
Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293
| | | |||||| | ||| | || | | | ||||| || || ||||| | ||
Sbjct 260904 CGATTACACGTTCTGGAAATGTAGCACTCTCATGATTAATCCAGTTCAATGCCCACTTGG 260845
Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344
|||| ||| | ||| || || || ||||| || ||||||| | ||||||
Sbjct 260844 CTTTCTTCCCTACACACGGAAGCGTCTCGATCGCATTAAATAAGAAATCTC 260794
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652
|||||||| | |||||||| || ||| | || ||||| ||||| ||||| || || ||
Sbjct 260280 ACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGGA 260221
Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGG 93684
|||||||| ||||| || ||||||||||| ||
Sbjct 260220 TATTGAATAGGAAAAATTACAAAACGATTTGG 260189
>seq413
Length=1946445
Score = 122 bits (134), Expect = 1e-22
Identities = 91/104 (88%), Gaps = 7/104 (7%)
Strand=Plus/Plus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|||||||||||| |||||||||||||||| ||||| |||||||||| || ||||||||||
Sbjct 1660108 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 1660167
Query 126327 GTTCGAACCCCACACCTGACAAA-----TTATTATTGGAATTTT 126365
|||||||||||||||||| |||| || ||||||||| |||
Sbjct 1660168 GTTCGAACCCCACACCTGGCAAATTTTTTTTTTATTGGAAATTT 1660211
>seq1565
Length=679223
Score = 100 bits (110), Expect = 3e-16
Identities = 78/91 (86%), Gaps = 3/91 (3%)
Strand=Plus/Plus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326
|||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 445583 AGGTTGGCCGAGCGGT-TAAGGCGCCAGACTTAAGATCTGGTTCCCATATGGGAGCGTGG 445641
Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||||||||| | |||| | || ||
Sbjct 445642 GTTCGAACCCCACACTTAGCAAACTTTTTTT 445672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556376950611640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |