Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2744 167 3e-36 seq413 122 1e-22 seq1565 100 3e-16 >seq2744 Length=396707 Score = 167 bits (184), Expect = 3e-36 Identities = 165/213 (77%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 |||||| || || || | || ||| |||||||||||||||| |||||| || |||||||| Sbjct 260661 TATGTAAGTTTCAATGAGCAAAGAGTACATTTCAGAATGGATATTCTCTATGGCAATTTG 260602 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 ||| ||||||||||| | ||||| | ||| | |||||| ||| || ||||| | || Sbjct 260601 GAAGCCGTAGAAACAACGTGCTTCGGCGATTTTCACTTCCTGACTGAACCTCTCAATCAG 260542 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 ||| |||||||| ||||||||||| || || || || ||||| | ||| ||||||| Sbjct 260541 ATTCTCATTGACGATACCATCGGAAGCGGCGAAGAATGCCAAGACATGAGAGATAAAATA 260482 Query 93541 TTTCTCATCATCTTTAAGCTT---ATCCCAATC 93570 ||||||||| || ||||| ||||||||| Sbjct 260481 TTTCTCATCGGAATTCAGCTTTTCATCCCAATC 260449 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||||||| || | || ||||| || || | ||||| | | ||||||||||| Sbjct 261024 CTTCGTCTCGTGAGATGAGTTCGTTGCTAAAAGTGAGGCCTGGCATGACTCCTCGTTTCT 260965 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | |||||||| || | |||||||| || ||||| ||||| || || || || |||| Sbjct 260964 TCAGCCAAAAGATAGCCGCAAAACTGCCGCTGAAAAAAATACCCTCGACTGCCGCGAATG 260905 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | | | |||||| | ||| | || | | | ||||| || || ||||| | || Sbjct 260904 CGATTACACGTTCTGGAAATGTAGCACTCTCATGATTAATCCAGTTCAATGCCCACTTGG 260845 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||| ||| | ||| || || || ||||| || ||||||| | |||||| Sbjct 260844 CTTTCTTCCCTACACACGGAAGCGTCTCGATCGCATTAAATAAGAAATCTC 260794 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||||||| | |||||||| || ||| | || ||||| ||||| ||||| || || || Sbjct 260280 ACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGGA 260221 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGG 93684 |||||||| ||||| || ||||||||||| || Sbjct 260220 TATTGAATAGGAAAAATTACAAAACGATTTGG 260189 >seq413 Length=1946445 Score = 122 bits (134), Expect = 1e-22 Identities = 91/104 (88%), Gaps = 7/104 (7%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 1660108 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 1660167 Query 126327 GTTCGAACCCCACACCTGACAAA-----TTATTATTGGAATTTT 126365 |||||||||||||||||| |||| || ||||||||| ||| Sbjct 1660168 GTTCGAACCCCACACCTGGCAAATTTTTTTTTTATTGGAAATTT 1660211 >seq1565 Length=679223 Score = 100 bits (110), Expect = 3e-16 Identities = 78/91 (86%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||| Sbjct 445583 AGGTTGGCCGAGCGGT-TAAGGCGCCAGACTTAAGATCTGGTTCCCATATGGGAGCGTGG 445641 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||| | || || Sbjct 445642 GTTCGAACCCCACACTTAGCAAACTTTTTTT 445672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556376950611640