Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5959 104 2e-17 seq68007 96.9 2e-15 seq5117 95.1 9e-15 >seq5959 Length=1871824 Score = 104 bits (114), Expect = 2e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 21814 TTTATAAGTAATAG-TGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATT 21872 |||||| ||| ||| | || |||||||| ||| | ||||| | || || |||||||| Sbjct 1420883 TTTATATGTA-TAGATTCATCATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATC 1420825 Query 21873 ACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAA 21932 || | || |||||| | || || | | || | || || || || ||| Sbjct 1420824 ACTCTTGAGGTGGAAGCTTCTGATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAA 1420765 Query 21933 GAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTA 21992 || ||| | ||| | | || || | || ||||||||||| || ||||| |||||| | Sbjct 1420764 GAAGGTATCCCTCCAGATCAGCAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGA 1420705 Query 21993 AAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTA 22052 | |||| | |||| ||||| || |||||||| ||||| |||||| | || ||||| | Sbjct 1420704 AGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTT 1420645 Query 22053 CGAGGAGGA 22061 ||||||||| Sbjct 1420644 CGAGGAGGA 1420636 >seq68007 Length=840 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| | ||||| |||||||| ||| | ||| ||||| || Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| || |||||||| | || | | ||| Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || ||||||||||||||||| || ||| | |||| | |||| || || Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| || |||||| |||| | || | ||||||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGCCTTCGAGGAGGA 240 >seq5117 Length=2329582 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| || ||||| || ||||| || ||||| || || || Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || |||||| || || || || | ||| | | ||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| |||||||| ||||| || || | ||||| || Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTCTGATTATAAC 1167812 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||| |||||||| ||||| ||| |||| || Sbjct 1167813 ATTCAAAAGGAATCCACTCTGCATTTGGTTTT 1167844 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||| | || || ||||| || || ||||| ||||| || Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| |||||| || ||||| || | ||| | || Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||||| ||||| ||| | | ||||| ||| Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || | || |||| | ||||| ||||| || Sbjct 1167585 ATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1167631 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || ||||||| || ||||| || || ||||| |||| ||||| | Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854 Query 21893 AGAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 || ||| | | || | | |||| |||| || || ||||| || | ||| | Sbjct 1164855 GGACACGATCGA-GAACGTCAAAGCGAAAA-TTCAGGACAAAGAAGGCATCCCTCCGGAT 1164912 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | ||||||||||| || ||||| ||||| ||| | | ||||| Sbjct 1164913 CAACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTAT 1164972 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| || | || |||| | ||||| ||||| || Sbjct 1164973 AATATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1165022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357821409091894