Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5117 136 3e-27 seq68007 132 4e-26 seq52431 120 3e-22 seq1104 100 2e-16 seq5959 95.1 1e-14 >seq5117 Length=2329582 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || |||||||| ||||| | || ||||| ||||||||||| ||||| Sbjct 1167862 ATACCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCA 1167803 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||||| |||||||| ||||| |||| | | |||||| || ||| Sbjct 1167802 GACAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGA 1167743 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | || | ||||| | | || Sbjct 1167742 GGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCA 1167683 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| |||||| |||||||||||||| Sbjct 1167682 ACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 134 bits (148), Expect = 1e-26 Identities = 169/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATT-CTTTTTGAATGTTGTAATC 114211 ||||| || || ||||||||||||||||||| |||||||| ||| |||||| |||||||| Sbjct 1167178 ATACCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATC 1167119 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || || || ||||| |||||||| || || |||| | | ||| || || || Sbjct 1167118 AGACAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGG 1167059 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| || |||||||| ||| || || | | || | ||||| | | || Sbjct 1167058 AGGAATACCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTC 1166999 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| || | |||||||| || |||||||| || ||||||||||| Sbjct 1166998 GACCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || | ||| | ||| || || | || ||||| || || || ||||| || Sbjct 1164797 ATTCCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCA 1164738 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||||| || || |||||| |||| | ||| || ||||| || Sbjct 1164737 GACAAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGT 1164678 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||||| |||| | |||| ||||||| | ||| Sbjct 1164677 GGGATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCG 1164618 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || || | ||| | || || ||||||| || ||||||||||||||||||| Sbjct 1164617 ACCTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCATGG 1164566 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || ||||||||||| ||||| | || |||||||||||||| |||||||| Sbjct 1167406 ATACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCA 1167347 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || ||||| || || |||| | | |||||| || ||| Sbjct 1167346 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGA 1167287 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || || | | || | ||||| | | ||| Sbjct 1167286 GGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCG 1167227 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || | |||||| || ||||||||||| Sbjct 1167226 ACCTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| || ||||| || ||||| | |||||| ||||| Sbjct 1167614 AACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTC 1167555 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||| || ||||| |||| | | ||| || |||||||| || ||||||||||| Sbjct 1167554 AAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTG 1167495 Query 114293 AATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 ||| ||| | |||| | | || | ||||| | | |||||| |||| || | ||||| Sbjct 1167494 AAT-TTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTT 1167436 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || ||||| |||||||||||||| Sbjct 1167435 TACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || || ||||| ||| || ||| || || || ||||| || ||| Sbjct 1168057 GTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCA 1167998 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||||| || ||||||||||| |||||||| ||| ||| |||| Sbjct 1167997 GCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTT 1167938 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | ||||| |||| || | ||||| || || ||||| Sbjct 1167937 ACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTC 1167878 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1167877 TTGACAAATATCTGCAT 1167861 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | | ||| ||||| | || |||||||| |||||||||||||| Sbjct 1165253 ATACCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCA 1165194 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || ||||| || ||| |||| | | ||| || || ||| Sbjct 1165193 GATAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGA 1165134 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || ||| | | || | ||||| | | || Sbjct 1165133 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCA 1165074 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| |||||| |||||||||||||| Sbjct 1165073 ACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 98.7 bits (108), Expect = 8e-16 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| || || ||||||||||| ||||| | || |||||||| |||||||| ||||| Sbjct 1166949 ATACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCA 1166890 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || ||| ||||||||||||||| || || |||| | | ||| || || || Sbjct 1166889 GATAAT-GTGCGACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGG 1166831 Query 114272 AGGAATGCCTTCT 114284 |||||| || ||| Sbjct 1166830 AGGAATACCCTCT 1166818 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| || ||||| || ||||| | |||||| ||||| Sbjct 1165005 AACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTC 1164946 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||| || ||||| |||| | | ||||| |||||||| |||||||||||||| Sbjct 1164945 AAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTG 1164886 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || ||| | | || | ||||| | | ||| || |||| || | || || Sbjct 1164885 AATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTT 1164826 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||||| || || |||||||| Sbjct 1164825 TCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 >seq68007 Length=840 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||| |||||||| || | |||||||| ||||| |||||||||||| Sbjct 468 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGA 409 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | | ||||| || ||||| || ||| |||| | ||||||||| || || || Sbjct 408 AAGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGG 349 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || |||||||| || || || ||||| | ||| | ||| || | | ||| || Sbjct 348 GATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAAC 289 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||||||||| ||||| || |||||||| ||||| Sbjct 288 TTCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || ||| | ||| | || ||||| ||||||||||| || ||| Sbjct 242 ATTCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCG 183 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| || |||||||| ||||| | || | ||| ||||| || || Sbjct 182 GAAAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGG 123 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| || || || | | ||| | ||||| | | ||| Sbjct 122 GGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 63 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | ||||| || || ||||||||||| || ||||||||| || Sbjct 62 ACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCATGCCT 9 >seq52431 Length=384 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | |||||| | ||| | || ||||| |||||||||||||| ||| Sbjct 307 ATTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCG 248 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | | ||| ||||||||||||||||| | || |||||||| || || ||| Sbjct 247 GAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGA 188 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| || || || | | ||| | ||||| | | ||| Sbjct 187 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 128 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | ||||| || || ||||| || || || ||||||||| || Sbjct 127 ACTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCATGCCT 74 >seq1104 Length=1074228 Score = 100 bits (110), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| ||||||||||||||| | ||| || ||| || || ||||| |||||| ||| Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 |||| |||||||| || || || || || || ||||| ||||| || | | | Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | |||||||| || || || || | ||| | || || || || || ||||| |||| Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 114373 AAATCTGC---ATGGCTTA 114388 | |||||| |||||||| Sbjct 390854 AGATCTGCATAATGGCTTA 390836 >seq5959 Length=1871824 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 114198 TGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGA 114257 ||||||||||| ||| | ||| | | ||| ||||||||||||||||| | || ||| Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 114258 CGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACG 114317 ||||| || || |||||||| || |||||||| || || || | | ||| | Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 114318 GTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 114377 ||||| | | ||| || || | || | |||||||| || ||||| || ||||| || Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 114378 TGCAT 114382 ||||| Sbjct 1420631 TGCAT 1420635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||||| ||| | ||||| || || || |||||||| ||| | ||| | |||||| Sbjct 1420654 AACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTC 1420713 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || ||||| |||| ||||| || || || ||||| || ||||||||||| Sbjct 1420714 CAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGGATACCTTCTTTGTCTTG 1420773 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | || | || || | | ||| || || | || | ||||| Sbjct 1420774 GATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCAAGAGTGATGGTTTT 1420833 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || || ||||| ||||| || |||||| Sbjct 1420834 TCCAGTGAGGGTTTTCACAAAGATTTGCATG 1420864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419778476709732