Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq8067 102 9e-17 seq5117 100 3e-16 seq52431 98.7 1e-15 seq4170 96.9 4e-15 seq6773 93.3 5e-14 seq5789 91.5 2e-13 >seq8067 Length=2142017 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1737467 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1737526 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||||||||||||| Sbjct 1737527 TAACCACTATACTACCGAGGATTG 1737550 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 113051 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 113110 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 113111 ATACTATCGAGGATT 113125 >seq5117 Length=2329582 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| |||| || || || |||| || |||||||| |||||||| Sbjct 1164758 TCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAG 1164699 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT- 42136 || | || |||||||| | ||| | || ||||||||| ||| | |||| | ||| Sbjct 1164698 ATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCC-TGAATCTTTGCCTTTACGTT 1164640 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| | || || |||| || ||||| || || || | ||||||||| Sbjct 1164639 CTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTAC 1164580 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 1164579 AAAAATCTGCAT 1164568 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | |||||| | |||||||||||||| || || ||||| |||||||||| Sbjct 1165251 ACCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGA 1165192 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| || || ||||| || | | |||||| || | || Sbjct 1165191 TAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 1165132 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| ||| ||| |||| | ||||| || | | |||||| || || | Sbjct 1165131 GATTCCTTCCTTATCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1165073 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || ||||| | || || ||||| || ||||| Sbjct 1165072 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| |||||||||| ||| ||||||||||| || ||||||| ||| || || |||| Sbjct 1167845 CAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCGTC 1167786 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || || || || ||||| || || | || ||| || || | || | | |||||||| Sbjct 1167785 TTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTGTC 1167726 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| |||| | ||||| || | | |||||| || || || || | ||||||| Sbjct 1167725 C-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGG 1167667 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| | || || ||||| || ||||| Sbjct 1167666 TCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| ||||||||||||||| || ||||||||||||||||||| || || || |||| Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || ||||| || || || || || | || ||| || |||| || | | || |||| Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGT- 1167271 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| |||| | || | || | | ||||| | || || || | ||||||| Sbjct 1167270 CTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGG 1167211 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || |||| || || || || || ||||| Sbjct 1167210 TCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 >seq52431 Length=384 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | |||||| |||| ||| | |||| ||||||||||| ||||| || | Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | || || || || |||||||| || || || |||||||| || | || Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| ||||| |||||| || | | | | ||||| | ||| || Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq4170 Length=962499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 469083 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 469142 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 469143 TAACCACTATACTACCGAGGA 469163 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 469649 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 469590 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 469589 TGACCACTATACTACCGAGGA 469569 >seq6773 Length=634978 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 317786 AAAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 317845 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 317846 TAACCACTATACTATCGAGGA 317866 >seq5789 Length=839996 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| ||||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 488660 ATAAAAAAAGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 488719 Query 57055 TACTCACCACTATACTACCGAGGATTGAATATATAACTTGA 57095 |||| |||||||||||| |||| |||| | |||||||| Sbjct 488720 TACTGACCACTATACTATCGAG----GAATTTTTAACTTGA 488756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542740809188240