Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq8067 102 9e-17
seq5117 100 3e-16
seq52431 98.7 1e-15
seq4170 96.9 4e-15
seq6773 93.3 5e-14
seq5789 91.5 2e-13
>seq8067
Length=2142017
Score = 102 bits (112), Expect = 9e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct 1737467 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1737526
Query 57058 TCACCACTATACTACCGAGGATTG 57081
| ||||||||||||||||||||||
Sbjct 1737527 TAACCACTATACTACCGAGGATTG 1737550
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 113051 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 113110
Query 57066 ATACTACCGAGGATT 57080
|||||| ||||||||
Sbjct 113111 ATACTATCGAGGATT 113125
>seq5117
Length=2329582
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || |||||||| |||| || || || |||| || |||||||| ||||||||
Sbjct 1164758 TCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAG 1164699
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT- 42136
|| | || |||||||| | ||| | || ||||||||| ||| | |||| | |||
Sbjct 1164698 ATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCC-TGAATCTTTGCCTTTACGTT 1164640
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||| | || || |||| || ||||| || || || | |||||||||
Sbjct 1164639 CTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTAC 1164580
Query 42197 AAAGATTTGCAT 42208
||| || |||||
Sbjct 1164579 AAAAATCTGCAT 1164568
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || | |||||| | |||||||||||||| || || ||||| ||||||||||
Sbjct 1165251 ACCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGA 1165192
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || ||||| || || ||||| || | | |||||| || | ||
Sbjct 1165191 TAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 1165132
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||| ||| ||| |||| | ||||| || | | |||||| || || |
Sbjct 1165131 GATTCCTTCCTTATCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1165073
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | |||||||| || ||||| | || || ||||| || |||||
Sbjct 1165072 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024
Score = 100 bits (110), Expect = 3e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
||| |||||||||| ||| ||||||||||| || ||||||| ||| || || ||||
Sbjct 1167845 CAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCGTC 1167786
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| || || || ||||| || || | || ||| || || | || | | ||||||||
Sbjct 1167785 TTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTGTC 1167726
Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174
| ||| |||| | ||||| || | | |||||| || || || || | |||||||
Sbjct 1167725 C-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGG 1167667
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || ||||| | || || ||||| || |||||
Sbjct 1167666 TCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633
Score = 82.4 bits (90), Expect = 8e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
||| ||||||||||||||| || ||||||||||||||||||| || || || ||||
Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| ||||| || || || || || | || ||| || |||| || | | || ||||
Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGT- 1167271
Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174
| ||| |||| | || | || | | ||||| | || || || | |||||||
Sbjct 1167270 CTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGG 1167211
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || |||| || || || || || |||||
Sbjct 1167210 TCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
>seq52431
Length=384
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||||| | |||||| |||| ||| | |||| ||||||||||| ||||| || |
Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| | | || || || || |||||||| || || || |||||||| || | ||
Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | ||| ||||| |||||| || | | | | ||||| | ||| ||
Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||||||||| ||||| || ||||| || ||||| |||||
Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78
>seq4170
Length=962499
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct 469083 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 469142
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||||||||||
Sbjct 469143 TAACCACTATACTACCGAGGA 469163
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct 469649 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 469590
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||||||||||
Sbjct 469589 TGACCACTATACTACCGAGGA 469569
>seq6773
Length=634978
Score = 93.3 bits (102), Expect = 5e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| |||||| || | | |||||||||| ||||||||||||||||||||| ||||
Sbjct 317786 AAAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 317845
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||| ||||||
Sbjct 317846 TAACCACTATACTATCGAGGA 317866
>seq5789
Length=839996
Score = 91.5 bits (100), Expect = 2e-13
Identities = 81/101 (80%), Gaps = 4/101 (4%)
Strand=Plus/Plus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|| ||||| ||||| || | | |||||||||| ||||||||||||||||||||| |
Sbjct 488660 ATAAAAAAAGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 488719
Query 57055 TACTCACCACTATACTACCGAGGATTGAATATATAACTTGA 57095
|||| |||||||||||| |||| |||| | ||||||||
Sbjct 488720 TACTGACCACTATACTATCGAG----GAATTTTTAACTTGA 488756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542740809188240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |