Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5117 136 4e-27 seq52431 111 2e-19 seq68007 102 8e-17 seq4102 102 8e-17 seq5959 96.9 3e-15 seq1104 91.5 1e-13 >seq5117 Length=2329582 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | ||| | || | ||| | || |||||||||||||| |||||||| | Sbjct 1167404 ACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGA 1167345 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| ||||| || |||||| | || | | ||| || |||||||| Sbjct 1167344 CAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGG 1167285 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| ||| || ||| | ||| || || || || Sbjct 1167284 AATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGAC 1167225 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || |||||||| |||||||| ||||| Sbjct 1167224 CTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||||||| || || | |||| || ||||| || || || ||||| || | Sbjct 1164794 CCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 1164735 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||||||||||||||| || || | || | || |||||||| || || Sbjct 1164734 AAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGG 1164675 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || ||| |||||| ||| | || || || || || Sbjct 1164674 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACC 1164615 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| |||||| |||||||| || ||||| ||||| ||||| Sbjct 1164614 TCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568 Score = 122 bits (134), Expect = 9e-23 Identities = 165/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTT-TTGAATGTTGTAATCTG 64274 ||| ||||| | ||| | |||| ||| | ||| ||||| || |||||| |||||||| | Sbjct 1167176 ACCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAG 1167117 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||||| ||||||| || || || |||||| | || | | |||||| ||||||| Sbjct 1167116 ACAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAG 1167057 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| || ||||| ||||| ||||| ||| || ||| | ||| || || || | Sbjct 1167056 GAATACCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGA 1166997 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | || ||||| || | |||||| |||||||| ||||| Sbjct 1166996 CCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || || | ||| | || |||||||| |||||||||||||| | Sbjct 1165251 ACCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGA 1165192 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| ||||| || ||||| | || | || |||||| || ||||| Sbjct 1165191 TAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 1165132 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || || || ||||| ||||| ||| ||| | || || || || | Sbjct 1165131 GATTCCTTCCTTATCCTGAATTTTG-GCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1165073 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | |||||| || ||||||||||| || ||||| ||||| Sbjct 1165072 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | || || | || | |||||||| || ||||| || ||||||| Sbjct 1167632 ACCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGA 1167573 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || |||||||||| ||||| || ||| | || | || |||||| || ||||| Sbjct 1167572 GAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGG 1167513 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| || || | |||| ||||| ||| ||| | || || || || | Sbjct 1167512 GATTCCTTCTTTGTCCTG-AATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGA 1167454 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | || || || || | ||||| || ||||| ||||| Sbjct 1167453 CTTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || | || | ||| | || ||||| ||||||||||| ||||| | Sbjct 1167860 ACCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGA 1167801 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| || || || || ||| | || | | ||| || || ||||| Sbjct 1167800 CAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGG 1167741 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||| || || || ||||| ||||| ||| ||| | || || || || | Sbjct 1167740 AATTCCTTCCTTGTCCTGAATTTTG-GCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1167682 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | |||||| || ||||||||||| || ||||| ||||| Sbjct 1167681 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | | || ||| || || |||| || |||||||| || || ||||| || | Sbjct 1168087 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGAC 1168028 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || || |||||||| || |||| || | || || ||||||||| Sbjct 1168027 AAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGA 1167968 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| |||||| |||||| ||| | || || || || || Sbjct 1167967 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACC 1167908 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || || || | ||| || || || || ||||| Sbjct 1167907 TCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 1167861 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | ||| | || | ||| | || |||||||| |||||||| ||||| | Sbjct 1166947 ACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGA 1166888 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | |||||||| || || |||||| | || | | |||||| |||||||| Sbjct 1166887 TAATGTGCGACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 1166828 Query 64336 AATTCCTTCT 64345 ||| || ||| Sbjct 1166827 AATACCCTCT 1166818 >seq52431 Length=384 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || ||||| |||||||||||||| || | | || | | || ||| Sbjct 286 ACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCA 227 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || || || ||| |||| || |||||||| || ||||||||||| ||||| ||||| Sbjct 226 AGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGG 167 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| || | ||| || || || ||||| | || | ||| || Sbjct 166 ATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTTTTA 107 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| || ||||| || ||||| Sbjct 106 CCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq68007 Length=840 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | |||| || | || ||||| ||||| ||||||||||| | Sbjct 468 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGA 409 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | ||||||| ||||| || || || | || | ||||| || || || || Sbjct 408 AAGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGG 349 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| ||||||||||| ||||| || | ||||| || || || Sbjct 348 GATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAAC 289 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | || |||||||| | ||| || || |||||||||||| Sbjct 288 TTCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCATT 240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| ||||||||||| || || | | || | | || Sbjct 224 AGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAAAGAGTTCTGCCATCC 165 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || ||||| ||| |||| | || || || || || |||||||| ||||| || Sbjct 164 TCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGAATTCCCTCTTTGTCC 105 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | ||| || || || ||||| | || | ||| Sbjct 104 TGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTT 45 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | |||||||||||| || ||||| Sbjct 44 TTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq4102 Length=4342353 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 ||| || || | ||||||||| | ||| || | |||||| ||| |||| || | ||||| Sbjct 713356 AAACTCTCCAGACAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTC 713297 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 ||| || ||||| || || ||||| | || || |||||| || | || | || || Sbjct 713296 GTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGTGAATT 713237 Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG 154210 || || ||||| | || || | ||| || || |||||||||| || | || || Sbjct 713236 TCTCACTCCGTGCTCCGCGATCTTCGCTTTCAATTCATCCCAATTCCATAAATCCGTTGG 713177 Query 154211 TTGCACGTTCCACATGTCGTATTG 154234 || ||||||||||| |||||||| Sbjct 713176 TTTAACGTTCCACATATCGTATTG 713153 >seq5959 Length=1871824 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318 ||||||||||| || | | || | | || ||||| || || || ||| |||| || Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 |||||||| || ||||||||||| ||||| || || ||||| ||| ||| || | | Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || || || || ||||| | ||| | ||| ||||| || | ||| || || || ||| Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 64439 TGCATT 64444 |||||| Sbjct 1420631 TGCATT 1420636 >seq1104 Length=1074228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| |||||||||||||| | | |||||| | || || ||||| ||||| || | | Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||||||||| || || || || ||||| || || || || || || ||| ||| || Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || ||| || || || | || | |||||| || || | ||||| || | Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 390854 AGATCTGCAT 390845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499210664878840