Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5117 116 4e-21 seq52431 114 1e-20 seq68007 105 7e-18 seq5959 100 3e-16 seq1104 87.8 2e-12 >seq5117 Length=2329582 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||||||| | ||| || || | | | || ||||| ||||| || || || Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || ||||| || || | | |||| | | ||| || |||||||| Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | ||||| | || | ||||| | | || || Sbjct 1167511 ATTCCTTCTTTGTCC-TGAATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGAC 1167453 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||| || ||||| |||||||||||||| Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405 Score = 111 bits (122), Expect = 2e-19 Identities = 156/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTT-TTGAATGTTGTAGTCGCTCATAGTACGCGAGT 138460 |||||||||||||| | || ||||| |||||| ||||| || || || || || Sbjct 1167161 CAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGT 1167102 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | ||||||||||| |||| | |||| | | ||| || || ||||| ||||| ||||||| Sbjct 1167101 CTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGT 1167042 Query 138521 CGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 | ||| |||| | || | | || | ||||| | | ||| ||||| | || | Sbjct 1167041 C-TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATA 1166983 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| |||||||| || ||||||||||| Sbjct 1166982 GTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | | |||||| ||||| | | || |||||||||||||| || || | Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| ||||||||||| || | | |||| | | |||||| || ||||| Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||| | | || | ||||| | || ||| || Sbjct 1167739 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1167681 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| |||||| |||||||||||||| Sbjct 1167680 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| ||||| | | ||| || || | | |||| ||||| || || |||||||| | Sbjct 1164794 CCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 1164735 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || || | |||| | ||| || ||||| || || Sbjct 1164734 AAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGG 1164675 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | || | ||||||| | ||| || Sbjct 1164674 ATGCCTTCCTTGTCC-TGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGAC 1164616 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||| || | || || || |||| || ||||||||||||||||||| Sbjct 1164615 CTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCATGG 1164566 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || || ||||||||| || ||| || |||||||||||| || || | Sbjct 1168054 GATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCG 1167995 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || || | ||||| || ||||| || || |||||||| ||| |||||| ||||| Sbjct 1167994 AAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTC-TTGAATTTTTGCTTTTAC 1167936 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | | ||| ||||| | || | ||||| ||||| ||||| || Sbjct 1167935 ATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTT 1167876 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1167875 GACAAATATCTGCAT 1167861 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| ||||| | | || || |||||||| ||||| || || || || ||| Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 ||||| ||||| |||| | |||| | | |||||| || ||||| |||||||||||||| Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270 Query 138522 GGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||| | || | | || | ||||| | | ||| ||||| | || | | Sbjct 1167269 -TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGG 1167211 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || | |||||| || ||||||||||| Sbjct 1167210 TCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||||||| | ||| || || | | | || ||||| ||||| || || || Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || ||||| || || | | |||| | | ||||| |||||||| Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | ||| | | || | ||||| | | || || Sbjct 1164902 ATGCCTTCTTTGTC-CTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| ||||| || || |||||||| Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||| | ||| ||||| | |||| || || ||||||||||| || Sbjct 1165250 CCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGAT 1165191 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || ||||| ||||| |||| |||| | | ||| || || ||||| Sbjct 1165190 AGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGG 1165131 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||| | ||| | | || | ||||| | || ||| || Sbjct 1165130 ATTCCTTCCTTATCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1165072 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| |||||| |||||||||||||| Sbjct 1165071 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 >seq52431 Length=384 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||||||| | ||| | | || ||||||||||||||||||||| Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| ||||||||||| | | | || |||||||| || || ||||| Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| || | | ||| | ||||| | | || || Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | |||||||| || ||||| || || || ||||||||| || Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCATGCCT 74 >seq68007 Length=840 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| ||| | ||| | |||| |||||||||||||| |||||| Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | ||||| |||||||| || | | | || | ||| ||||| || || || Sbjct 179 AGAGTTCTGCCA-TCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGG 121 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| |||||| || | | ||| | ||||| | | || || Sbjct 120 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAAC 61 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | |||||||| || ||||||||||| || ||||||||| || Sbjct 60 TTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCATGCCT 9 >seq5959 Length=1871824 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||||| ||| | | |||||||| || |||||||||||| Sbjct 1420637 CCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1420696 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || ||||| || || | | |||| ||||| || || || ||||| Sbjct 1420697 AGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGG 1420756 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| || ||| | | || | || || | | |||||| Sbjct 1420757 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACC 1420816 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| ||||| || ||||| ||||| || |||||| Sbjct 1420817 TCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCATG 1420864 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 138430 TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGA 138489 ||||||||||||||| | ||| | ||||| ||||||||||| | | | || ||| Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 138490 CGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACG 138549 ||||| || || ||||| || || |||||||| |||||| || | | ||| | Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 138550 GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATC 138609 ||||| | | || || || | || | ||||| ||||| ||||| || ||||| || Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 138610 TGCAT 138614 ||||| Sbjct 1420631 TGCAT 1420635 >seq1104 Length=1074228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 138417 GTTTGACTCCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTAC 138475 ||||| | ||||| ||||||||||| ||| | ||| ||| ||||| || ||||| | Sbjct 391042 GTTTG-CACCTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGC 390984 Query 138476 CGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTT 138535 | | |||| || |||||||| || || || || || || ||||| ||| || | Sbjct 390983 CAGCGAAGATGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCT 390924 Query 138536 TTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 | | | || | |||||||| | ||| ||||| | || | || ||||| || || | Sbjct 390923 TAACATTCTCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGG 390864 Query 138596 TTTTTACAAAAATCTGC---ATGGCTTA 138620 |||| ||||| |||||| |||||||| Sbjct 390863 TTTTCACAAAGATCTGCATAATGGCTTA 390836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495831203803920