Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq68007 140 3e-28 seq5117 118 1e-21 seq52431 113 4e-20 seq2744 84.2 2e-11 >seq68007 Length=840 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | || |||| || || || |||||||||||||| || |||||| Sbjct 467 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 408 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || || | ||||| |||||| | || || || || || || || || Sbjct 407 AGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGG 348 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||||||||| ||||| ||| | ||||| ||| || |||| || ||| Sbjct 347 ATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACT 288 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||||||||| ||||| || |||||||||||||| Sbjct 287 TCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | || || ||||| || |||||||||||||| || ||||| ||| Sbjct 242 ATTCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCG 183 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| |||||| || || | ||||| ||||| || || || Sbjct 182 GAAAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGG 123 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || || ||||| || | ||||| ||||| |||| || Sbjct 122 GGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 63 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||||| || || ||||||||||| || || ||||| Sbjct 62 ACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq5117 Length=2329582 Score = 118 bits (130), Expect = 1e-21 Identities = 170/234 (73%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTT-TTGGATATTATAATC 45169 || || ||||| || ||||| |||| ||| | ||| |||||||| ||| ||||| ||||| Sbjct 1167178 ATACCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATC 1167119 Query 45170 GCTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 ||| | | | || || | ||||||||| || | ||||||| ||||| || Sbjct 1167118 A--GACAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCG 1167061 Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGA 45286 || ||||| || ||||| ||||||||||| || | || | || | ||||| |||| Sbjct 1167060 GGAGGAATACCCTCTTTGTCTTGAATTTTCGCCTTCA-CGTTCTCGATTGTGTCTGAAGC 1167002 Query 45287 CTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || | || | |||||||| || |||||||| || ||||| ||||| Sbjct 1167001 CTCGACCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||||||| || | |||||| || ||||||||||| || ||||||| Sbjct 1167862 ATACCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAAT-- 1167805 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | ||| || | || || || | ||||||||| || | ||||||| || || || | Sbjct 1167804 CAGACAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTG 1167745 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||| || || |||||||| ||||| || | ||||| || | || Sbjct 1167744 GAGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCT 1167685 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | || | || || || || | |||||| |||||||| ||||| Sbjct 1167684 CAACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| | || | || | || || ||||||||||| |||||||| || || Sbjct 1164797 ATTCCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCA 1164738 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || ||||| ||| | ||||| ||||||||||| || Sbjct 1164737 GACAAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGT 1164678 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || ||||| ||| || | || | || | |||||||||| ||| Sbjct 1164677 GGGATGCCTTCCTTGTCCTGAATCTTTGCCTTTA-CGTTCTCAATAGTGTCGGAAGCCTC 1164619 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || || ||||| | || ||||||||||| ||||| Sbjct 1164618 GACCTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || ||||| || | ||||| || ||||| ||||| ||||| ||||| Sbjct 1167406 ATACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCA 1167347 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || || | |||||||| || | ||||||| || || || | Sbjct 1167346 --GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGG 1167289 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| |||||||| ||||||||||| || | || | || | ||||| |||| | Sbjct 1167288 GAGGAATACCTTCTTTGTCTTGAATTTTCGCCTTCA-CGTTCTCGATTGTGTCTGAAGCC 1167230 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || | || || || |||| |||||| || ||||| ||||| Sbjct 1167229 TCGACCTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||| || ||||||||||| || || || || | ||| Sbjct 1167607 TGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGC 1167548 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||| | ||||| ||||| || || |||||||| || |||||||| Sbjct 1167547 TTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATTTTA 1167488 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||| || | |||||||| ||||| | |||||| || || Sbjct 1167487 GCTTTAACATTCTCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTA 1167428 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||| ||||| Sbjct 1167427 AGTGTTTTGACAAAAATCTGCAT 1167405 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| || |||||||| || ||| | ||| || || Sbjct 1168069 ACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCG 1168010 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || ||| | |||| || ||| || || || |||||||| ||||| |||||| Sbjct 1168009 AGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTGA 1167950 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| ||| | || | ||||| |||| |||||| || || || | ||||| Sbjct 1167949 ATTTTTGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTC 1167890 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || || ||||| || ||||| || ||||| ||| || || Sbjct 1167889 CCAGTGAGAGTCTTGACAAATATCTGCATACCGCCACGAA 1167850 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||| || ||||||||||| || || || || | ||| Sbjct 1164998 TGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGC 1164939 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||||| ||| || ||||| || ||||||||||| || |||||||| Sbjct 1164938 TTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTC 1164879 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | ||||| |||| || || || | ||||| || || || || Sbjct 1164878 GCTTTGA-CGTTCTCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGT 1164820 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || ||||| Sbjct 1164819 CAAGGTTTTAACGAAGATCTGCAT 1164796 >seq52431 Length=384 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | ||| || ||||| || || ||||||||||| || || || ||| Sbjct 307 ATTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCG 248 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||| || | |||||| || || | |||| || ||||| || || Sbjct 247 GAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGA 188 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| ||||| ||||| || | ||||| ||||| |||| || Sbjct 187 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 128 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||||| || || ||||| || || || || ||||| Sbjct 127 ACTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq2744 Length=396707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 138403 CTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAGCCCCGGCATGACGCCTTTGGTCT 138462 ||||||| || ||||| |||||||||||||| || || || |||||||| ||| ||| Sbjct 261024 CTTCGTCTCGTGAGATGAGTTCGTTGCTAAAAGTGAGGCCTGGCATGACTCCTCGTTTCT 260965 Query 138463 TGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaaaaCGCCTTCGAC 138511 | | ||||||| ||||| |||||||| ||||||| || ||||| Sbjct 260964 TCAGCCAAAAGATAGCCGCAAAACTGCCGCTGAAAAAAATACCCTCGAC 260916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451610460069560