Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq68007 140 3e-28
seq5117 118 1e-21
seq52431 113 4e-20
seq2744 84.2 2e-11
>seq68007
Length=840
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|||||||| || | || |||| || || || |||||||||||||| || ||||||
Sbjct 467 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 408
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || || || || | ||||| |||||| | || || || || || || || ||
Sbjct 407 AGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGG 348
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||||||||| ||||| ||| | ||||| ||| || |||| || |||
Sbjct 347 ATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACT 288
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || |||| ||||||||||| ||||| || ||||||||||||||
Sbjct 287 TCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| || || | || || ||||| || |||||||||||||| || ||||| |||
Sbjct 242 ATTCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCG 183
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| |||| |||||| || || | ||||| ||||| || || ||
Sbjct 182 GAAAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGG 123
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || ||||| || || ||||| || | ||||| ||||| |||| ||
Sbjct 122 GGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 63
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | ||||| || || ||||||||||| || || |||||
Sbjct 62 ACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13
>seq5117
Length=2329582
Score = 118 bits (130), Expect = 1e-21
Identities = 170/234 (73%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTT-TTGGATATTATAATC 45169
|| || ||||| || ||||| |||| ||| | ||| |||||||| ||| ||||| |||||
Sbjct 1167178 ATACCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATC 1167119
Query 45170 GCTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227
||| | | | || || | ||||||||| || | ||||||| ||||| ||
Sbjct 1167118 A--GACAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCG 1167061
Query 45228 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGA 45286
|| ||||| || ||||| ||||||||||| || | || | || | ||||| ||||
Sbjct 1167060 GGAGGAATACCCTCTTTGTCTTGAATTTTCGCCTTCA-CGTTCTCGATTGTGTCTGAAGC 1167002
Query 45287 CTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| || | || | |||||||| || |||||||| || ||||| |||||
Sbjct 1167001 CTCGACCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948
Score = 116 bits (128), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || |||||||| || | |||||| || ||||||||||| || |||||||
Sbjct 1167862 ATACCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAAT-- 1167805
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
| ||| || | || || || | ||||||||| || | ||||||| || || || |
Sbjct 1167804 CAGACAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTG 1167745
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||| ||||| || || |||||||| ||||| || | ||||| || | ||
Sbjct 1167744 GAGGAATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCT 1167685
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| ||||| | || | || || || || | |||||| |||||||| |||||
Sbjct 1167684 CAACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| ||||| | || | || | || || ||||||||||| |||||||| || ||
Sbjct 1164797 ATTCCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCA 1164738
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | || ||||| ||| | ||||| ||||||||||| ||
Sbjct 1164737 GACAAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGT 1164678
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| |||||||| || || ||||| ||| || | || | || | |||||||||| |||
Sbjct 1164677 GGGATGCCTTCCTTGTCCTGAATCTTTGCCTTTA-CGTTCTCAATAGTGTCGGAAGCCTC 1164619
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| ||||| || | || || ||||| | || ||||||||||| |||||
Sbjct 1164618 GACCTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568
Score = 102 bits (112), Expect = 7e-17
Identities = 165/233 (71%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || ||||| || | ||||| || ||||| ||||| ||||| |||||
Sbjct 1167406 ATACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCA 1167347
Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | | || || | |||||||| || | ||||||| || || || |
Sbjct 1167346 --GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGG 1167289
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| ||||| |||||||| ||||||||||| || | || | || | ||||| |||| |
Sbjct 1167288 GAGGAATACCTTCTTTGTCTTGAATTTTCGCCTTCA-CGTTCTCGATTGTGTCTGAAGCC 1167230
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || | || | || || || |||| |||||| || ||||| |||||
Sbjct 1167229 TCGACCTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|||| || |||||||| || ||||||||||| || || || || | |||
Sbjct 1167607 TGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGC 1167548
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | ||||| | ||||| ||||| || || |||||||| || ||||||||
Sbjct 1167547 TTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATTTTA 1167488
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||| | || | ||||| || | |||||||| ||||| | |||||| || ||
Sbjct 1167487 GCTTTAACATTCTCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTA 1167428
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| |||||||| |||||
Sbjct 1167427 AGTGTTTTGACAAAAATCTGCAT 1167405
Score = 100 bits (110), Expect = 3e-16
Identities = 154/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || ||||| || |||||||| || ||| | ||| || ||
Sbjct 1168069 ACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCG 1168010
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| || || ||| | |||| || ||| || || || |||||||| ||||| ||||||
Sbjct 1168009 AGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTGA 1167950
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|||||| ||| | || | ||||| |||| |||||| || || || | |||||
Sbjct 1167949 ATTTTTGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTC 1167890
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
|| || ||||| || ||||| || ||||| ||| || ||
Sbjct 1167889 CCAGTGAGAGTCTTGACAAATATCTGCATACCGCCACGAA 1167850
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|||| || |||||||| || ||||||||||| || || || || | |||
Sbjct 1164998 TGCAAGGTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGC 1164939
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | ||||||| ||| || ||||| || ||||||||||| || ||||||||
Sbjct 1164938 TTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTC 1164879
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
||||| || | || | ||||| |||| || || || | ||||| || || || ||
Sbjct 1164878 GCTTTGA-CGTTCTCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGT 1164820
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
| ||||| || || || |||||
Sbjct 1164819 CAAGGTTTTAACGAAGATCTGCAT 1164796
>seq52431
Length=384
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| || || | ||| || ||||| || || ||||||||||| || || || |||
Sbjct 307 ATTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCG 248
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || ||| || | |||||| || || | |||| || ||||| || ||
Sbjct 247 GAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGA 188
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || ||||| ||||| ||||| || | ||||| ||||| |||| ||
Sbjct 187 GGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 128
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | ||||| || || ||||| || || || || |||||
Sbjct 127 ACTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78
>seq2744
Length=396707
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 138403 CTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAGCCCCGGCATGACGCCTTTGGTCT 138462
||||||| || ||||| |||||||||||||| || || || |||||||| ||| |||
Sbjct 261024 CTTCGTCTCGTGAGATGAGTTCGTTGCTAAAAGTGAGGCCTGGCATGACTCCTCGTTTCT 260965
Query 138463 TGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaaaaCGCCTTCGAC 138511
| | ||||||| ||||| |||||||| ||||||| || |||||
Sbjct 260964 TCAGCCAAAAGATAGCCGCAAAACTGCCGCTGAAAAAAATACCCTCGAC 260916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451610460069560
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