Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5959 125 2e-23 seq68007 122 2e-22 seq52431 120 7e-22 seq5117 116 9e-21 seq1104 102 2e-16 >seq5959 Length=1871824 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || || || || || |||||||| |||| ||||||||| | | ||| Sbjct 1420642 TCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1420701 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||||||||| |||||||| || ||||| ||||| ||||| || ||| || || Sbjct 1420702 TCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGGATACC 1420761 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| || || || | || || | | ||| || || | Sbjct 1420762 TTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCAAG 1420821 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||||||||| ||||| Sbjct 1420822 AGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTG 1420860 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199450 GTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 ||||||||| | | ||| || ||||| || || || || || || || || |||||||| Sbjct 1420456 GTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTG 1420515 Query 199510 CTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||| || ||| |||||| ||| ||||| || || |||||| ||| | ||||| Sbjct 1420516 CTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTC 1420575 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | ||| || || | || || || || || || ||||| |||||||| ||||| Sbjct 1420576 TGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATTTG 1420632 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || |||||||| ||||||||||||| ||| | |||| |||||| ||||| Sbjct 1420737 CTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAACATCCAG 1420678 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || |||||||| ||||| || ||| | | |||||| Sbjct 1420677 AAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGA 1420642 >seq68007 Length=840 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| | || | |||||| || || |||||||||| |||||| || | | |||| Sbjct 461 CGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTC 402 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || ||||| ||||| || || |||||||| | |||||| || || || |||||| Sbjct 401 CTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCT 342 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| |||| ||| ||| | ||| || | | ||| || || | Sbjct 341 TCTTTATCTTGTAT-TTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAG 283 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| |||||||||||||| Sbjct 282 GGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTG 244 >seq52431 Length=384 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || || || || || || |||||||| | ||||||||| | | ||| Sbjct 299 TCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGT 240 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| || || || || || || || || ||||||||||| || ||| |||||| Sbjct 239 TCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCC 180 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || || |||||| ||| | ||||||| | ||| || || | Sbjct 179 CTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAG 120 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || |||||||||||||| ||||| || || || Sbjct 119 GGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTG 81 >seq5117 Length=2329582 Score = 116 bits (128), Expect = 9e-21 Identities = 158/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTT-TTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||||| || | || | || || ||||| ||| | ||||| |||| ||| || Sbjct 1167169 CGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGT 1167110 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || || |||||||| ||||| | | |||||| || ||| ||| || Sbjct 1167109 GCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACC 1167050 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| || ||||||| |||| ||||||| | || || ||||| Sbjct 1167049 CTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAA 1166990 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||||||||| || ||||| || Sbjct 1166989 TGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTG 1166951 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| || || || ||||| |||| |||||||||| ||| || | ||| Sbjct 1164783 TCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCC 1164724 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| ||||||||||| |||||||| | ||| |||||||| || || ||||| Sbjct 1164723 GTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTT 1164664 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||||||||||| ||| ||| || | ||||| | | || || || | || || Sbjct 1164663 GTCCTGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTAT 1164604 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | || || |||||||| || Sbjct 1164603 GGTCTTTCCGGTCAACGTCTTTACAAAAATCTG 1164571 Score = 114 bits (126), Expect = 3e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || || || | |||||| |||| | ||| | |||||||| ||||| |||||| Sbjct 1165220 GTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCGAGCTGTTTTCCG 1165161 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 |||||||| | | |||||| || ||| |||||||| |||||||| ||| || || Sbjct 1165160 GCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 1165102 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || |||| ||||||| | || || ||||| ||||| ||||| ||||| | ||| Sbjct 1165101 GACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTCCCGTCAAAGT 1165042 Query 199612 TTTCACAAAAATTTG 199626 ||| |||||||| || Sbjct 1165041 TTTGACAAAAATCTG 1165027 >seq1104 Length=1074228 Score = 102 bits (112), Expect = 2e-16 Identities = 136/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | |||||| || | | ||| | ||||| |||||||| || || |||||| Sbjct 391035 CCTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAG 390976 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| ||||| || || || ||||| || ||||| ||||| ||| || Sbjct 390975 ATGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTC 390916 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| |||||| | | ||||| || | || || |||||||||||||| ||||||||| Sbjct 390915 TCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACA 390856 Query 199619 AAAATTTG 199626 || || || Sbjct 390855 AAGATCTG 390848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177871641002237