Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5959 104 3e-17 seq5117 102 9e-17 seq52431 95.1 1e-14 seq68007 89.7 6e-13 >seq5959 Length=1871824 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||| | || ||||| | |||| |||||| ||||| ||||||||||| Sbjct 1420637 CCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1420696 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || || ||||| || || || |||| || ||||| || | || Sbjct 1420697 AGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGG 1420756 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| || | | || || | |||||| Sbjct 1420757 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACC 1420816 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || || || ||||| |||||||||||||| Sbjct 1420817 TCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 >seq5117 Length=2329582 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || | ||||| |||| || |||||||| || ||||| Sbjct 1164758 TCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAG 1164699 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || |||||||| | || | || ||||||||| ||||| ||| | || Sbjct 1164698 ATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTC 1164639 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || || | || ||||| || || |||| ||| || ||| Sbjct 1164638 TCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACA 1164579 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 1164578 AAAATCTGCAT 1164568 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || || ||||| | || | || || || | |||| || || ||||||||||||||| Sbjct 1168090 TTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCG 1168031 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || | ||| || |||| ||||| |||||||| ||||| |||| | || || |||| Sbjct 1168030 GACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGA 1167971 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTC 46542 || | || ||| |||| | ||| || | | || | || | | |||||| | || Sbjct 1167970 GGAATGCCCTCTTTGT-CTTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAAGCCTC 1167912 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| ||||| || || || || || ||||| || ||||| Sbjct 1167911 GACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 1167861 >seq52431 Length=384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | |||||| |||||||| | ||| |||||||| || ||||||||||| Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || || || || || || || |||| |||||||| || | || Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| ||| || ||| | | | | ||||| | ||| || Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| ||||| || || || || ||||| ||||| Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq68007 Length=840 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | |||| |||||||| | ||| |||||||| || || |||||||| Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || || || ||||| || || ||||| || || || || | || Sbjct 179 AGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGA 120 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| |||||| ||| || ||| | | | | ||||| | ||| || Sbjct 119 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 60 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 59 TCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564747271419720