Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4102 113 5e-20
seq2744 93.3 5e-14
seq33144 82.4 9e-11
>seq4102
Length=4342353
Score = 113 bits (124), Expect = 5e-20
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924
|||||| |||||| || ||||| |||| ||| || ||||| || || ||| || |
Sbjct 712661 ACAAACATATTAACAGCGATAGACGCTAAATTGCACACAGCAACTTCCCCAGGACCAGAA 712602
Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984
|||| | ||||||| ||| ||||| | ||||||||||| || |||| ||| |||||
Sbjct 712601 TATTCAACAATTTCAGTACACAGATTGCTGCATTTGATAGTGCCTAAATGTTGGTGATT- 712543
Query 47985 TTNNNNTTG-TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043
| | | ||||| || |||||||||||| ||||||||||||||||| |||||
Sbjct 712542 TGATTTTCGATTACAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTCCTTGAGA 712483
Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGCCT 48075
| | || | ||| |||||||| ||||
Sbjct 712482 TCTGAGAATGGCGAGCCACACAGTCCTGGCCT 712451
Score = 91.5 bits (100), Expect = 2e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338
|| || |||||||| | ||| || | |||||||||||||||||||||||||| || ||
Sbjct 712089 TTTCTCTTAAGTTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCTAAATAAATAGCA 712030
Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376
| | | ||||||||||| || ||||| ||||| | |||
Sbjct 712029 AATGCTCCTGGTCGTTTGTTTCCTCCCTGATCAACATA 711992
>seq2744
Length=396707
Score = 93.3 bits (102), Expect = 5e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520
||||||||| | ||||||||||| || | || ||||||||||| | ||| |||||| |
Sbjct 260281 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGG 260222
Query 19521 ATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCCATTT 19579
|||||| |||||||| || ||||| | |||| | ||||| || | ||||||| ||
Sbjct 260221 ATATTGAATAGGAAAAATTACAAAACGATTTGGACCTTCTTGCAGCAGTGGTTCCAGTT 260163
>seq33144
Length=491
Score = 82.4 bits (90), Expect = 9e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668
||||||| |||||| | ||||| |||| || || ||||| | || || |||||
Sbjct 491 TTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATAATTGTACGTTTCT 432
Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728
||| | || || || || || ||||| |||| ||| | ||||||||||| ||||
Sbjct 431 ATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTAACATATGTTGA 372
Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788
|| || |||| || ||| ||| ||||| | ||||| | |||| | |||||||||
Sbjct 371 GGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTTAAAA 312
Query 48789 CCAAAATA 48796
|| |||
Sbjct 311 TGAATATA 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561620390690040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |