Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4102 113 5e-20 seq2744 93.3 5e-14 seq33144 82.4 9e-11 >seq4102 Length=4342353 Score = 113 bits (124), Expect = 5e-20 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||||| || ||||| |||| ||| || ||||| || || ||| || | Sbjct 712661 ACAAACATATTAACAGCGATAGACGCTAAATTGCACACAGCAACTTCCCCAGGACCAGAA 712602 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| | ||||||| ||| ||||| | ||||||||||| || |||| ||| ||||| Sbjct 712601 TATTCAACAATTTCAGTACACAGATTGCTGCATTTGATAGTGCCTAAATGTTGGTGATT- 712543 Query 47985 TTNNNNTTG-TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | | ||||| || |||||||||||| ||||||||||||||||| ||||| Sbjct 712542 TGATTTTCGATTACAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTCCTTGAGA 712483 Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGCCT 48075 | | || | ||| |||||||| |||| Sbjct 712482 TCTGAGAATGGCGAGCCACACAGTCCTGGCCT 712451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 || || |||||||| | ||| || | |||||||||||||||||||||||||| || || Sbjct 712089 TTTCTCTTAAGTTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCTAAATAAATAGCA 712030 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 | | | ||||||||||| || ||||| ||||| | ||| Sbjct 712029 AATGCTCCTGGTCGTTTGTTTCCTCCCTGATCAACATA 711992 >seq2744 Length=396707 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 ||||||||| | ||||||||||| || | || ||||||||||| | ||| |||||| | Sbjct 260281 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATCTCCCAGATATCAGG 260222 Query 19521 ATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCCATTT 19579 |||||| |||||||| || ||||| | |||| | ||||| || | ||||||| || Sbjct 260221 ATATTGAATAGGAAAAATTACAAAACGATTTGGACCTTCTTGCAGCAGTGGTTCCAGTT 260163 >seq33144 Length=491 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||||| |||||| | ||||| |||| || || ||||| | || || ||||| Sbjct 491 TTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATAATTGTACGTTTCT 432 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | || || || || || ||||| |||| ||| | ||||||||||| |||| Sbjct 431 ATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTAACATATGTTGA 372 Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788 || || |||| || ||| ||| ||||| | ||||| | |||| | ||||||||| Sbjct 371 GGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTTAAAA 312 Query 48789 CCAAAATA 48796 || ||| Sbjct 311 TGAATATA 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561620390690040