Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq68007 167 2e-36 seq5117 165 6e-36 seq5959 132 4e-26 seq514 87.8 1e-12 >seq68007 Length=840 Score = 167 bits (184), Expect = 2e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||||||||| || || |||||||| ||||| || |||||||||| | ||| || | Sbjct 455 CGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTCCTACCG 396 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | || || ||||| || || |||||||||||||| || || || ||||||||| Sbjct 395 TCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCTTCTTTA 336 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| ||||| |||||| |||||| || || || | ||| |||||||| || | Sbjct 335 TCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAGGGTAATT 276 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| | ||| || ||||| || ||||| Sbjct 275 GTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 >seq5117 Length=2329582 Score = 165 bits (182), Expect = 6e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 101234 TAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTG 101293 ||||||||||| ||||| | || | || | ||||| ||||||||||| || |||||| Sbjct 1168096 TAGACATTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTG 1168037 Query 101294 TAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGA 101353 || |||| | ||||| | || || | |||||| || || || |||| | |||||| Sbjct 1168036 TAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGA 1167977 Query 101354 TCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGAC 101413 ||||| |||||||| ||||| |||||||||||| ||||||| | || | ||||| || Sbjct 1167976 TCGGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAA 1167917 Query 101414 GTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||| ||||| || || | ||| || |||||||||||||| Sbjct 1167916 GCCTCGACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 1167861 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||||| | ||| || || | ||| ||||| || || ||||| ||||| | | Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | | || || | |||||| || ||||| ||||| | |||||||| || || Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || |||||||| ||| || | || | ||||| || | ||| || Sbjct 1164902 ATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTACC 1164843 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || || || || || ||||| || || |||||||| Sbjct 1164842 TCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| ||||| | || ||||||||||| ||||||||||| | | || | | || Sbjct 1167388 AAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTCT 1167329 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | || || || ||||| ||||| | |||||||||||| ||||| |||||||| ||| Sbjct 1167328 TCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTCT 1167269 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 |||||||| || || | || | ||||| || | || || || | |||| || Sbjct 1167268 TGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGTC 1167209 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||||||||| || || |||||||| Sbjct 1167208 TTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 120 bits (132), Expect = 2e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTT-TTGTATATTGTAATCGGCGATAGTTCTGGCATC 101316 ||||||||||| | |||||||| || ||| ||||||||||| | | || | | || Sbjct 1167160 AAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167101 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 || | ||| || || ||||| ||||| | ||| |||||||| ||||| || ||||| || Sbjct 1167100 TTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGTC 1167041 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 ||||||||| || || | || | ||||| || | || || || | |||| || Sbjct 1167040 TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAGT 1166981 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || | |||||| || || |||||||| Sbjct 1166980 TTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || |||||||| ||||| || || |||||||| || | | || | | || || Sbjct 1164777 AACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTC 1164718 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || || || |||||||| || || || || || |||||||| || || || Sbjct 1164717 AAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTG 1164658 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| ||| ||||| | || | |||||| || | || || || || || | || || Sbjct 1164657 AATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTT 1164598 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| || || |||||||| ||||||||||| Sbjct 1164597 TCCGGTCAACGTCTTTACAAAAATCTGCATGGT 1164565 >seq5959 Length=1871824 Score = 132 bits (146), Expect = 4e-26 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344 || || ||||| |||| | |||||| |||| || | ||| ||||| ||||| |||| | Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 ||||| ||||| || ||||| || ||||| || || ||||| || ||| |||||| Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 ||||| || | ||| ||||||||||| | |||||||| || | ||| || ||||| || Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 101465 TGCATGGTTACGCGAAGATTTGTAAAACTA 101494 ||||| | | |||||| ||| ||||| Sbjct 1420631 TGCATTCCTCCTCGAAGA--CGTAGAACTA 1420658 >seq514 Length=2723796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| || || || || || || || |||||||| || || ||||| || || | Sbjct 26482 CCGCCTCGCAAGCGCAATACCAAGTGCAGCGTAGATTCCTTCTGGATATTATAGTCCGAC 26541 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| |||||||||||||| ||||| ||||| | || ||||| |||||| Sbjct 26542 AATGTCCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGATCTGGCGGA 26601 Query 101363 ATGCCT 101368 || ||| Sbjct 26602 ATTCCT 26607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395942686685427