Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 143 2e-29
seq1104 91.5 1e-13
>seq5117
Length=2329582
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | |||| ||| |||||||| || ||| || |||||||| || ||||||||
Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| |||| || | || || || ||||| |||| || ||||||||| | |||
Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||| || ||| ||| | | | ||||||||||| ||
Sbjct 1167739 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACT 1167680
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || || ||||||||||||||||| ||||||||||||||
Sbjct 1167679 TCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| | || ||||| ||||| ||||||||||||||| |||| | || ||
Sbjct 1165232 ACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCG 1165173
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| ||| || ||||| || |||| | ||| ||||| | || | || ||||| || |
Sbjct 1165172 AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTGA 1165113
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || ||| ||| | | | ||||||||||| || |||| || || || |||
Sbjct 1165112 ATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTT 1165053
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||||||||||| ||||||||||||||
Sbjct 1165052 CCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024
Score = 118 bits (130), Expect = 8e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| |||||||| | ||| ||||||||||||||||||||||| | | || ||||
Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| | ||| || |||||||| |||| || ||||||||| | |||| || || |||||
Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||| || || || | | | ||||| ||||| ||||||| || || ||
Sbjct 1167269 TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGT 1167210
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || |||||||| || |||||||||||
Sbjct 1167209 CTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
Score = 104 bits (114), Expect = 2e-17
Identities = 152/214 (71%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGT 48612
||| || ||||||| ||| | | ||| |||||||||||||||||| | | || |||
Sbjct 1167161 CAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGT 1167102
Query 48613 CGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGT 48672
| || | || || |||||||| |||| || ||| ||||| | |||| ||||| ||||
Sbjct 1167101 CTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGT 1167042
Query 48673 CGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732
| ||| || || || | | | ||||| ||||| ||||||| || || |
Sbjct 1167041 CTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAG 1166982
Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || | |||||| || |||||||||||
Sbjct 1166981 TTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || || || || |||||||| ||||| | | || |||| ||
Sbjct 1164776 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCA 1164717
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || || || |||| || || || || | || | ||| |||||||| |
Sbjct 1164716 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGA 1164657
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|||||| ||||| | | || || || ||||| ||||| | || || || |||
Sbjct 1164656 ATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTTT 1164597
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| ||||| || ||||||||||||||||| |||
Sbjct 1164596 CCGGTCAACGTCTTTACAAAAATCTGCATGGTG 1164564
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || |||||||| ||||| || ||| | || |||| || | ||||| || |||||
Sbjct 1164986 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1164927
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| || |||||||||| || | ||| || ||||| ||| || ||| ||
Sbjct 1164926 ATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTC 1164867
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || || || || ||||||| ||||| || ||||||||||| ||||| ||
Sbjct 1164866 TCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACG 1164807
Query 48756 AAAATCTGCAT 48766
|| ||||||||
Sbjct 1164806 AAGATCTGCAT 1164796
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || |||||||| ||||| || ||| | || |||| || | ||||| || |||||
Sbjct 1167595 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1167536
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| | ||| ||||||| || | || || ||||| ||| || ||| |||
Sbjct 1167535 ATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTAACATTC 1167476
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | ||||| || || || |||| || |||||||| || || | ||||| |||
Sbjct 1167475 TCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACA 1167416
Query 48756 AAAATCTGCAT 48766
|||||||||||
Sbjct 1167415 AAAATCTGCAT 1167405
>seq1104
Length=1074228
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636
|||| ||||| |||||||| || ||| | || | || |||| ||| || || || || |
Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975
Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696
| || ||||||||||| | || | ||||||||||| ||||| || |||
Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915
Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756
| | | || || ||||| ||||| | ||||| || || ||||| | ||||| ||||
Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855
Query 48757 AAATCTGCAT 48766
| ||||||||
Sbjct 390854 AGATCTGCAT 390845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380614882879053
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