Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5117 143 2e-29 seq1104 91.5 1e-13 >seq5117 Length=2329582 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | |||| ||| |||||||| || ||| || |||||||| || |||||||| Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| || | || || || ||||| |||| || ||||||||| | ||| Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||| ||| | | | ||||||||||| || Sbjct 1167739 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACT 1167680 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||||||||||||||| |||||||||||||| Sbjct 1167679 TCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||||| ||||| ||||||||||||||| |||| | || || Sbjct 1165232 ACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCG 1165173 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || ||||| || |||| | ||| ||||| | || | || ||||| || | Sbjct 1165172 AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTGA 1165113 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | ||||||||||| || |||| || || || ||| Sbjct 1165112 ATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTT 1165053 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||||||| |||||||||||||| Sbjct 1165052 CCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| |||||||| | ||| ||||||||||||||||||||||| | | || |||| Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||| || |||||||| |||| || ||||||||| | |||| || || ||||| Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || || || | | | ||||| ||||| ||||||| || || || Sbjct 1167269 TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGT 1167210 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||| || ||||||||||| Sbjct 1167209 CTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGT 48612 ||| || ||||||| ||| | | ||| |||||||||||||||||| | | || ||| Sbjct 1167161 CAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGT 1167102 Query 48613 CGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGT 48672 | || | || || |||||||| |||| || ||| ||||| | |||| ||||| |||| Sbjct 1167101 CTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGT 1167042 Query 48673 CGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 | ||| || || || | | | ||||| ||||| ||||||| || || | Sbjct 1167041 CTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAG 1166982 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || | |||||| || ||||||||||| Sbjct 1166981 TTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || || |||||||| ||||| | | || |||| || Sbjct 1164776 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCA 1164717 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || |||| || || || || | || | ||| |||||||| | Sbjct 1164716 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGA 1164657 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||||| | | || || || ||||| ||||| | || || || ||| Sbjct 1164656 ATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTTT 1164597 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| || ||||||||||||||||| ||| Sbjct 1164596 CCGGTCAACGTCTTTACAAAAATCTGCATGGTG 1164564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| ||||| || ||| | || |||| || | ||||| || ||||| Sbjct 1164986 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1164927 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||||| || | ||| || ||||| ||| || ||| || Sbjct 1164926 ATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTC 1164867 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || ||||||| ||||| || ||||||||||| ||||| || Sbjct 1164866 TCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACG 1164807 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 1164806 AAGATCTGCAT 1164796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| ||||| || ||| | || |||| || | ||||| || ||||| Sbjct 1167595 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1167536 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | ||| ||||||| || | || || ||||| ||| || ||| ||| Sbjct 1167535 ATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTAACATTC 1167476 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| || || || |||| || |||||||| || || | ||||| ||| Sbjct 1167475 TCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACA 1167416 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 1167415 AAAATCTGCAT 1167405 >seq1104 Length=1074228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| ||||| |||||||| || ||| | || | || |||| ||| || || || || | Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || ||||||||||| | || | ||||||||||| ||||| || ||| Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || ||||| ||||| | ||||| || || ||||| | ||||| |||| Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 48757 AAATCTGCAT 48766 | |||||||| Sbjct 390854 AGATCTGCAT 390845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380614882879053