Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1820 111 5e-19 seq779 109 2e-18 seq1122 93.3 1e-13 seq4102 84.2 6e-11 >seq1820 Length=2256 Score = 111 bits (122), Expect = 5e-19 Identities = 149/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||| || |||||||| |||||||| || || |||||| | || || || Sbjct 1416 ATAGTCATACGAGAAGGGATAGCATGAGGATTGATAATAATATCGGGTGTAAGACCCTC- 1358 Query 251905 GCAGT-GAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGT 251962 |||| ||| |||||||| | || | | ||| || ||||| || ||||||||||||| Sbjct 1357 GCAGGAGAATGGCATATCTTCTTGC-CTATACTGAATTCCACATGTACCCTTTTGTCCGT 1299 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 ||||||| || |||||||| || ||| ||| ||||| || | |||| || | Sbjct 1298 GACGAGATGCAAATTTATCACCGATTTGTGGAATGCGTACACTGCGCACTCGAATTTTGC 1239 Query 252023 AGAAGTTGTAACCATCACCGTT 252044 |||| || || || |||| ||| Sbjct 1238 AGAATTTATATCCTTCACTGTT 1217 >seq779 Length=4234449 Score = 109 bits (120), Expect = 2e-18 Identities = 201/292 (69%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || |||||||||||||| ||||| ||| | || ||||| || || Sbjct 4049425 TTCCATAGCCTTTATCAAACGACGCTGAATGTAACCGGTTTCGGCCGTCTTTACGGCGGT 4049484 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCC 302692 ||| || ||||| ||||||||||||| || ||||| | | || ||| ||| || | Sbjct 4049485 ATCGATAAGACCTTCACGACCACCCATTGCGTGGAAATAGAATTCGGACGG-CGTGAGAC 4049543 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAA 302752 | | | | | || | || || ||||| || | ||| || | ||| ||| | | Sbjct 4049544 CAGCGAGATATGAATTTTCGACAAAACCGCGGGACTCTGGTCCGTAGTCATCCTTAATGA 4049603 Query 302753 AGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCT 302812 | || ||||| || || || | ||||| | || || ||||| || ||||||||||||| Sbjct 4049604 AATGCGGCAGCGTTCTTTTGCGAAAGCCGAAGGGTATGCGCTTACCCTCAACGTTCTGCT 4049663 Query 302813 GTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 | || | || | || | ||| || || || | || | ||| || ||||| Sbjct 4049664 GGCCTACACAAGCGATGACCTGAGAGATGTTGATATTAGAGCCTTTCGAGCC 4049715 >seq1122 Length=5092386 Score = 93.3 bits (102), Expect = 1e-13 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || ||||| ||||| ||||| | ||||| || || ||||||||| | Sbjct 738279 AAACAAATCTCTGACACGTCGGGCTCCCTGGCCAACGAGGATCTCATCAAATTCAGGGCC 738338 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | || || | ||||| ||| ||||| || || ||||| | ||| | | ||||| Sbjct 738339 CGCCACATGGAAGAATGGCACACCGGCTTCTCCGGCGACTGCACGCGCTAACAAAGTCTT 738398 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGA 289265 |||||||| || || || | || | |||||||| || | |||| | ||| || || Sbjct 738399 TCCTGTTCCTGGCGGGCCAACCAACAATACTCCCTTCGGCAATTTTCCGCCAAGGGCGGA 738458 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||| |||||| ||||||| |||||||| | | |||||| | ||||||||| Sbjct 738459 ---AAATTTGTCAGGGTTCTTTAAGAATTCTACTACATTTAGAAGTTCTTGTTTTGCCTC 738515 Query 289326 ATC 289328 ||| Sbjct 738516 ATC 738518 >seq4102 Length=4342353 Score = 84.2 bits (92), Expect = 6e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 156308 AGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGT 156367 |||||||||||| || |||| ||||| ||||||| | ||||| ||||| ||| || Sbjct 711646 AGCGTTGAATAGCGTTGGTGAAGCATGTGTAAAATATCGTTCAGACAAATAATTGTACGT 711587 Query 156368 CTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATG 156427 || ||| || |||| | ||||||||| | || || |||||| ||||||| Sbjct 711586 TTCTATAACTTTGTCAATGTCGTTTTCGTGAATACCAACAGCTACTCTCATCAACATATG 711527 Query 156428 CTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTT 156487 ||||| | ||| || ||| |||| ||| ||| || || | ||| || ||||| Sbjct 711526 TTGAGGCCTCTCAACTATCTTGCCATTGATTTTCAGCAGATAGCTTCTTTCGAGCGTTTT 711467 Query 156488 AAACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523 || || | ||||| | | |||||| || | ||| Sbjct 711466 GAAACCAATATAATTATAACTAAAATCTCGATCGTA 711431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470506784987207