Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2744 114 2e-19 seq2694 87.8 2e-11 >seq2744 Length=396707 Score = 114 bits (126), Expect = 2e-19 Identities = 159/218 (73%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 869181 CTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCT 869240 ||||||| || ||| | |||||||||||| | |||||| ||||||| || || |||| Sbjct 261024 CTTCGTCTCGTGAGATGAGTTCGTTGCTAAAAGTGAGGCCTGGCATGACTCCTCGTTTCT 260965 Query 869241 TGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 | ||||||||||| | |||| |||||||| |||||| || |||||||| || || || Sbjct 260964 TCAGCCAAAAGATAGCCGCA-AAACTGCCGCTGAAAAAAATACCCTCGACTGCCGCGAAT 260906 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 |||| | || || | ||| ||| | | ||| | || ||||| |||| ||||| Sbjct 260905 GCGATTACACGTTCTGGAAA--TGTAG-CACTCTCATGATTAATCCAGTTCAATGCCCAC 260849 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 | ||| || |||| || |||| | ||| ||||| || Sbjct 260848 TTGGCTTTCTTCCCTACACACGGAAGCGTCTCGATCGC 260811 >seq2694 Length=6355204 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| ||||| || ||||| | || || ||||||||||| || || || | ||| | Sbjct 1052454 CACTCTCTTCGAACTGATCTTGGCAGCTAACTACCTCGATATTAAAGGACTTTTGGATGT 1052395 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 ||||| | || || || |||||||| |||||| ||||||| ||||| || ||||| Sbjct 1052394 CACATGCAAAACCGTCGCTAATATGATCAAAGGCAAGACGCCCGAAGAGATTCGTAAGAC 1052335 Query 1592284 CTTTAACATCAAG 1592296 |||||||||||| Sbjct 1052334 ATTTAACATCAAG 1052322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101434801819987