Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq68007 179 3e-40 seq52431 167 2e-36 seq5117 143 2e-29 seq5959 136 4e-27 seq1104 129 5e-25 seq4102 125 6e-24 >seq68007 Length=840 Score = 179 bits (198), Expect = 3e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || |||||||| || || || ||||| ||||| | Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || || ||||| |||||||| ||||| || || |||||| Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| ||||||||| |||| | || || |||||| Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| || |||| |||| | || ||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGCCTTCGAGGAGG 239 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || ||||| ||||| ||||| || ||||| ||||| | Sbjct 241 ATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTCG 300 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| |||||| || || ||||| ||||||||||| || || |||||| Sbjct 301 GATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCAA 360 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||| ||||| || ||||||||||| || || || | | || ||||| ||| Sbjct 361 CAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAAC 420 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| ||||| ||||| || || ||| | |||||||| Sbjct 421 ATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 467 >seq52431 Length=384 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || |||||||| || || || ||||| ||||| | Sbjct 78 ATGCAGATCTTCGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 137 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || || |||||||||||||| ||||| ||||| ||||| Sbjct 138 GACACAATAGAAAATGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 197 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || ||||| || |||||| |||| | || || || ||| Sbjct 198 CAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAAC 257 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| || |||| ||||| | || ||||| Sbjct 258 ATTCAAAAGGAATCCACACTTCATCTGGTTTTGCGTCTTCGAGGAGG 304 >seq5117 Length=2329582 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || |||||||| || || || ||||| ||||| | Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | |||| | ||| || || |||||||||||||| ||||| ||||| Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCTCCGGATCA 1167523 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| || || || || || || | | | ||||||||||| Sbjct 1167524 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1167583 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| | |||||||| | || ||||| || || Sbjct 1167584 TATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1167631 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| ||||||| | || || || || ||||| | || |||||||| | Sbjct 1164796 ATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTCG 1164855 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| || || ||||||||||| || ||||| ||||| Sbjct 1164856 GACACGATCGAGAACGTCAAAGCGAAA-ATTCAGGACAAAGAAGGCATCCCTCCGGATCA 1164914 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||||||||| || || || || || || | | | ||||||||||| Sbjct 1164915 ACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1164974 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| | |||||||| | || ||||| || || Sbjct 1164975 TATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1165022 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| |||| || || || || || | || || || || | Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| || | ||| || |||||||||||||| || ||||||||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAA-ATTCAAGACAAAGAAGGTATTCCTCCCGATCA 1167295 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 ||| | |||||||||||||| |||||||| || || || ||| |||| ||||| | Sbjct 1167296 ACAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGA-CGGACGCACATTGTCTGATTACA 1167354 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | |||||||| ||||| ||| | || ||||| ||| || | ||||| || Sbjct 1167355 ATATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGG 1167403 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| ||| | || ||| | ||||| || || || || ||||| || || || Sbjct 1164565 ACCATGCAGATTTTTGTAAAGACGTTGACCGGAAAGACCATAACCCTCGAGGTCGAGGCT 1164624 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | ||||| |||||| || ||||| ||||| || || || || Sbjct 1164625 TCCGACACTATTGAGAACGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCTGAC 1164684 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || |||||||||||||| || || || ||||| || || | | | |||| || || Sbjct 1164685 CAGCAACGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGCACCTTGTCTGACTAC 1164744 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || |||||||| || || |||||||| | |||||||||| || Sbjct 1164745 AATATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGATTGCGCGGCGG 1164794 Score = 127 bits (140), Expect = 2e-24 Identities = 170/230 (74%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || |||||||| || | || || || || | Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| || | ||| || ||||||||||| || || ||||||||||| Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAA-ATTCAAGACAAAGAGGGTATTCCTCCCGATCA 1167066 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 || | |||||||||||||| ||||| || || || || ||| |||| ||||| | Sbjct 1167067 GCAGAGATTGATCTTTGCCGGAAAACAACTCGAAGA-CGGACGCACATTGTCTGATTACA 1167125 Query 24882 ACATTCAA-AAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | |||||| |||||||| || |||| || || ||| || | ||||| || Sbjct 1167126 ATATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAGACTTCGCGGTGG 1167175 Score = 125 bits (138), Expect = 6e-24 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || | ||||| || || | Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || || || ||||| |||||||| ||||| |||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 || | ||||||||||| || ||||| || || || ||| | || |||| ||||||| Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCG-CACAC-TGTCTGATTATA 1167810 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||||||||||||||| || || || ||||| ||| Sbjct 1167811 ACATTCAAAAGGAATCCACTCTGCATTTGGTTTTG 1167845 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || |||||||| || || || || || || | Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | |||||| ||| || ||||||||||| || || |||||||||||| Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||| || || || || || || ||||| ||| |||| || || || Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 1168040 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || || ||||| ||||| ||| Sbjct 1168041 ATCCAGAAAGAATCTACACTTCAC 1168064 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 24802 AGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-- 24859 ||| || || ||||||||||| || | |||||||||||||| ||||| || || ||| Sbjct 1166818 AGAGGGTATTCCTCCCGATCAGCAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGG 1166877 Query 24860 TCGAGAAACA-TGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| ||| | || |||||||||||||| || ||||| ||| | || ||||| ||| | Sbjct 1166878 TCG---CACATTATCTGATTATAACATTCAGAAAGAATCCACATTGCATTTGGTTTTGAG 1166934 Query 24919 ATTGCGCGGAGG 24930 | | ||||| || Sbjct 1166935 ACTTCGCGGTGG 1166946 >seq5959 Length=1871824 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || ||||| || || || || || ||||| | Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| | || ||| |||||||||||||||||||| || ||||| ||||| Sbjct 1420803 GATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCAG 1420744 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||||||||| || || || ||||| ||| |||| | || || || ||| Sbjct 1420743 CAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAAC 1420684 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || ||||| || Sbjct 1420683 ATCCAGAAGGAGTCTACACTTCA 1420661 >seq1104 Length=1074228 Score = 129 bits (142), Expect = 5e-25 Identities = 144/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || ||||| || ||||| || || ||||| ||| || Sbjct 390845 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCC 390904 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || || |||||| Sbjct 390905 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAA 390964 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || ||||||||||||||| | | | | || ||||| ||| Sbjct 390965 CAGCGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAAC 391024 Query 24884 ATTCA-AAAGG 24893 ||||| ||||| Sbjct 391025 ATTCAGAAAGG 391035 >seq4102 Length=4342353 Score = 125 bits (138), Expect = 6e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 139062 GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT 139121 |||||| | || ||| || || |||| |||||||| || ||||| | || | Sbjct 712662 GACAAACATATTAACAGCGATAGACGCTAAATTGCACACAGCAACTTCCCCAGGACCAGA 712603 Query 139122 GTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATT 139181 ||||| |||||||| | ||||| ||| || || ||||| || ||||||| ||| ||||| Sbjct 712602 ATATTCAACAATTTCAGTACACAGATTGCTGCATTTGATAGTGCCTAAATGTTGGTGATT 712543 Query 139182 GCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 |||||| |||||| |||||||||||||||||| ||||| |||||||| |||| Sbjct 712542 TGATTTTCGATTACAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTCCTTG 712486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449506689599080