Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2744 215 4e-51 seq5117 107 2e-18 seq68007 87.8 1e-12 >seq2744 Length=396707 Score = 215 bits (238), Expect = 4e-51 Identities = 291/403 (72%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTT-TTAGCGGACACGAT 34313 || |||| ||||| |||||||| || || |||| | | |||| || | | || || Sbjct 253822 CCATGATGTCCGCACGCTTTGCAACCTTGCAAGATCGT-TCCTTTCTTTGAGTTAACCAT 253764 Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 || || |||||||| ||||| || |||| || | ||| | || ||||| |||||||| Sbjct 253763 CAGTTCGGTCTCCGGATTGTCGCAGGCCGGGCAAAGAACATATTTTCGGATAAAACCATC 253704 Query 34374 AAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTT 34433 ||||| || |||| ||| | || || ||||| ||||| || || || ||||| || Sbjct 253703 CAGCAGATCTTGTAGCTTTGTCGCATCATGCGAGCCATTGACAATAAAGCGCTCGTTCTT 253644 Query 34434 GTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGC 34493 | |||| | || || ||||| |||| |||||| ||||||||||| || || || | || Sbjct 253643 GAAATCAAATTGTGTCTGCGCACCCAACTCGCAACCGAAGTACTTGGTTGGATACGTAGC 253584 Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 ||||| || | ||||| || | || ||| || ||||| || |||||||| || || Sbjct 253583 TGGACGGCCGATTGCCTTCGCCACATCCACCATATTAACGATCACTGTCTTGATACCATT 253524 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 ||||| ||||| ||||| || ||| |||||||| || ||||| || || || || Sbjct 253523 TCCCTTGCCTTCCACCTTTGCCTGGATCCGCGGCATCTTATAGCGATAAAAGGCATCGCT 253464 Query 34614 CACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 |||||||| || |||||||| || |||| ||| | | |||| Sbjct 253463 AACATTGCGATTGACGTTCACGCTCGCCATGGTGACCGATGTT 253421 >seq5117 Length=2329582 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||||||||| || || ||||| || | || ||| || Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||| ||| ||||||||||| | || |||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || |||||||| || || | | ||| || | |||||||| Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAAT 1167356 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || ||||| |||| || ||||| || || || Sbjct 1167357 ATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGG 1167403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| ||| | || || ||||| || || | || ||| || Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | |||||| || ||| |||||||| ||| | || |||||| Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| || || || || || ||||| | |||| || | || ||||| Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 1168040 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || || ||||||||||| | ||| | || | |||| |||| ||||| Sbjct 1168041 ATCCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAA 1168090 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||||| || || || ||||| || | ||| ||| | Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| ||||| ||||| | || |||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || ||||| || || || | | ||| || | ||||| ||| Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTCTGATTATAAC 1167812 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || |||| |||| || || || || || || Sbjct 1167813 ATTCAAAAGGAATCCACTCTGCATTTGGTTTTGAGGCTTCGTGGCGG 1167859 >seq68007 Length=840 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || ||| | ||||||||||| |||||| | ||| || || Sbjct 240 AATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTC 299 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | |||||| || || || |||||||| | || ||||| Sbjct 300 GGATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCA 359 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | || || |||||||| || || | || || | | |||||||| Sbjct 360 ACAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAA 419 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| |||||||| | ||| | || ||| |||| || || || Sbjct 420 CATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412491854916923