Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq68007 159 3e-34 seq52431 154 1e-32 seq5117 150 1e-31 seq5959 136 3e-27 seq1104 91.5 1e-13 seq514 86.0 5e-12 >seq68007 Length=840 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||| |||| |||||| || ||||| |||||||||||||| || | Sbjct 240 TCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGA 181 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || ||||||||||||||| | ||||| | ||| ||||| || || Sbjct 180 AAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGG 121 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||||||||| || | ||| || ||| |||||| ||||| ||| ||| || Sbjct 120 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAAC 61 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || ||||| || || | ||||| || || |||||||| Sbjct 60 TTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq52431 Length=384 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||| |||| |||||| |||||||| ||||||||||| || || | Sbjct 305 TCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGA 246 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | | ||| || |||||||| |||||| | |||| | |||||||| || || Sbjct 245 AAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGG 186 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| |||||||||||||| | ||| || ||| |||||| ||||| ||| ||| || Sbjct 185 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAAC 126 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || ||||| || || | || || || || |||||||| Sbjct 125 TTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq5117 Length=2329582 Score = 150 bits (166), Expect = 1e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| || |||||||| ||||||||||||||||| | | |||||| || ||| Sbjct 1167841 ACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCGTCTTCG 1167782 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| |||||| | |||||||| || ||||| || ||||| || || ||||| || Sbjct 1167781 AGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTG- 1167723 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | ||||||| | || | ||||| || || ||||| | || || || || Sbjct 1167722 AATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTT 1167663 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| |||||||| Sbjct 1167662 TCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || ||||| || | || ||||| || ||||| |||||||| | Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || ||||| || |||||| | ||||||||||| |||||||| || Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || |||||||| || |||||| | |||||| | || | ||||| ||| |||||| Sbjct 1164902 ATGCCTTCTTTGTCCTG-AATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || || || || || ||||||||||| || ||||||||| Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCATT 1164795 Score = 140 bits (154), Expect = 2e-28 Identities = 162/212 (76%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTT-TTGAATGTTATAATCCG-CAATGGTGCGAGAATCAT 29635 || ||||| | ||| ||||| || |||||| || ||||| | ||||| |||| || | Sbjct 1167157 ACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATG-TGCGTCCGTCTT 1167099 Query 29636 CGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTT 29695 |||||||||| || ||| | |||||||| |||||||| || ||||||||||||||||||| Sbjct 1167098 CGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGTCTT 1167039 Query 29696 GTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 | |||||| | || || | || | ||||| ||| || || || | || |||||| Sbjct 1167038 G-AATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAGTT 1166980 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| | ||||| || || |||||||| Sbjct 1166979 TTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || ||||| || | || ||||| || ||||| |||||||| | Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || ||||| || |||||| | ||||| || ||||||||||| || Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || |||||||| || |||||| | ||| ||| | || | ||||| || ||| || Sbjct 1167511 ATTCCTTCTTTGTCCTG-AATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGAC 1167453 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || ||||| ||||| | ||||| ||||| |||||||| Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405 Score = 136 bits (150), Expect = 3e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || |||||||| || || || || || | | || || || |||||||| Sbjct 1168063 TGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGC 1168004 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | |||| |||||| ||||| || ||||| |||||||||||||| |||||| Sbjct 1168003 TTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTG-AATTTT 1167945 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||| | || | ||||| ||| || || || || || |||||||| ||||| Sbjct 1167944 TGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGT 1167885 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | || || |||||||||||||| Sbjct 1167884 GAGAGTCTTGACAAATATCTGCAT 1167861 Score = 132 bits (146), Expect = 4e-26 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636 |||||||| | ||||||||||||||||| || ||||| | ||||| |||| || || Sbjct 1167385 ACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATG-TGCGTCCGTCTTC 1167327 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||| ||||| || ||| | |||||||| || ||||| || |||||||| ||||||||||| Sbjct 1167326 GAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTCTTG 1167267 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 |||||| | || || | || | ||||| ||| || || || | || || || | Sbjct 1167266 -AATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGTCT 1167208 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| ||||| || || |||||||| Sbjct 1167207 TTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 111 bits (122), Expect = 1e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | ||||||||||| |||||||||||||| | | |||||| ||| || Sbjct 1166928 ACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGATAATGTGCGACCATCTTCA 1166869 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 |||||||| || ||| | |||||||| |||||||| || |||||||||||| Sbjct 1166868 AGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCT 1166818 >seq5959 Length=1871824 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || | |||||| || || || || || ||||| || || | Sbjct 1420636 TCCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGA 1420695 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || ||||| || |||||| | |||| | ||||||||| || || Sbjct 1420696 GAGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGG 1420755 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| | || ||||||| | |||| ||| |||||| ||| || Sbjct 1420756 GATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCAC 1420815 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| ||||| | |||||| ||||| || ||||| Sbjct 1420816 CTCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Score = 129 bits (142), Expect = 5e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 29602 TGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAAT 29661 |||||||| || || | || || | | ||| || |||||||| |||||| | |||| Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACA 29721 | |||||||| || ||||| ||||||||||| || | ||| || ||| |||||| Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 29722 GTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATC 29781 ||||| ||| ||| ||||||||||| || ||||||||||| | || || ||||| || Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 29782 TGCATT 29787 |||||| Sbjct 1420631 TGCATT 1420636 >seq1104 Length=1074228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| |||||||| ||||| | || ||||| ||| || || ||||||||||| | | Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 | | | || ||||| || || || ||||| ||||| || | || || ||| | | Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||||| || ||||| ||||| || || || || || || | |||||| |||| Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 29777 ATATCTGCAT 29786 | |||||||| Sbjct 390854 AGATCTGCAT 390845 >seq514 Length=2723796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | ||| |||| ||||| || ||||| ||||| || || || ||||| |||| | Sbjct 26482 CCGCCTCGCAAGCGCAATACCAAGTGCAGCGTAGATTCCTTCTGGATATTATAGTCCGAC 26541 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | ||| || | ||| || |||||| | ||||||||||||||||| ||||| Sbjct 26542 AATG-TCCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGATCTGGCGG 26600 Query 29679 AATACC 29684 ||| || Sbjct 26601 AATTCC 26606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384892855656051