Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq68007 159 3e-34
seq52431 154 1e-32
seq5117 150 1e-31
seq5959 136 3e-27
seq1104 91.5 1e-13
seq514 86.0 5e-12
>seq68007
Length=840
Score = 159 bits (176), Expect = 3e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | ||||| |||| |||||| || ||||| |||||||||||||| || |
Sbjct 240 TCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGA 181
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| || | ||| || ||||||||||||||| | ||||| | ||| ||||| || ||
Sbjct 180 AAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGG 121
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| ||||||||||| || | ||| || ||| |||||| ||||| ||| ||| ||
Sbjct 120 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAAC 61
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||| || || ||||| || || | ||||| || || ||||||||
Sbjct 60 TTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13
>seq52431
Length=384
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | ||||| |||| |||||| |||||||| ||||||||||| || || |
Sbjct 305 TCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGA 246
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| || | | ||| || |||||||| |||||| | |||| | |||||||| || ||
Sbjct 245 AAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGG 186
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| |||||||||||||| | ||| || ||| |||||| ||||| ||| ||| ||
Sbjct 185 AATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAAC 126
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||| || || ||||| || || | || || || || ||||||||
Sbjct 125 TTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78
>seq5117
Length=2329582
Score = 150 bits (166), Expect = 1e-31
Identities = 161/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||| || |||||||| ||||||||||||||||| | | |||||| || |||
Sbjct 1167841 ACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCGTCTTCG 1167782
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|||||||| |||||| | |||||||| || ||||| || ||||| || || ||||| ||
Sbjct 1167781 AGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTG- 1167723
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||| | ||||||| | || | ||||| || || ||||| | || || || ||
Sbjct 1167722 AATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTT 1167663
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || ||||| ||||| ||||||||
Sbjct 1167662 TCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633
Score = 145 bits (160), Expect = 6e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | |||||| || ||||| || | || ||||| || ||||| |||||||| |
Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || ||||| || |||||| | ||||||||||| |||||||| ||
Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || |||||||| || |||||| | |||||| | || | ||||| ||| ||||||
Sbjct 1164902 ATGCCTTCTTTGTCCTG-AATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTAC 1164844
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| | ||| || || || || || ||||||||||| || |||||||||
Sbjct 1164843 CTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCATT 1164795
Score = 140 bits (154), Expect = 2e-28
Identities = 162/212 (76%), Gaps = 5/212 (2%)
Strand=Plus/Minus
Query 29578 ACCAAATGAAGCGTGGATTCTTT-TTGAATGTTATAATCCG-CAATGGTGCGAGAATCAT 29635
|| ||||| | ||| ||||| || |||||| || ||||| | ||||| |||| || |
Sbjct 1167157 ACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATG-TGCGTCCGTCTT 1167099
Query 29636 CGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTT 29695
|||||||||| || ||| | |||||||| |||||||| || |||||||||||||||||||
Sbjct 1167098 CGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGTCTT 1167039
Query 29696 GTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754
| |||||| | || || | || | ||||| ||| || || || | || ||||||
Sbjct 1167038 G-AATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAGTT 1166980
Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| | ||||| || || ||||||||
Sbjct 1166979 TTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948
Score = 138 bits (152), Expect = 9e-28
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | |||||| || ||||| || | || ||||| || ||||| |||||||| |
Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || ||||| || |||||| | ||||| || ||||||||||| ||
Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || |||||||| || |||||| | ||| ||| | || | ||||| || ||| ||
Sbjct 1167511 ATTCCTTCTTTGTCCTG-AATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGAC 1167453
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| ||||| || ||||| ||||| | ||||| ||||| ||||||||
Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405
Score = 136 bits (150), Expect = 3e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| || |||||||| || || || || || | | || || || ||||||||
Sbjct 1168063 TGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGC 1168004
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|||||||| | |||| |||||| ||||| || ||||| |||||||||||||| ||||||
Sbjct 1168003 TTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTG-AATTTT 1167945
Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| ||| | || | ||||| ||| || || || || || |||||||| |||||
Sbjct 1167944 TGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGT 1167885
Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786
| || || ||||||||||||||
Sbjct 1167884 GAGAGTCTTGACAAATATCTGCAT 1167861
Score = 132 bits (146), Expect = 4e-26
Identities = 159/211 (75%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636
|||||||| | ||||||||||||||||| || ||||| | ||||| |||| || ||
Sbjct 1167385 ACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATG-TGCGTCCGTCTTC 1167327
Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696
||| ||||| || ||| | |||||||| || ||||| || |||||||| |||||||||||
Sbjct 1167326 GAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTCTTG 1167267
Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755
|||||| | || || | || | ||||| ||| || || || | || || || |
Sbjct 1167266 -AATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGTCT 1167208
Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| ||||| || || ||||||||
Sbjct 1167207 TTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177
Score = 111 bits (122), Expect = 1e-19
Identities = 91/111 (82%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||| | ||||||||||| |||||||||||||| | | |||||| ||| ||
Sbjct 1166928 ACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGATAATGTGCGACCATCTTCA 1166869
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688
|||||||| || ||| | |||||||| |||||||| || ||||||||||||
Sbjct 1166868 AGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCT 1166818
>seq5959
Length=1871824
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | ||| || || | |||||| || || || || || ||||| || || |
Sbjct 1420636 TCCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGA 1420695
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | ||| || ||||| || |||||| | |||| | ||||||||| || ||
Sbjct 1420696 GAGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGG 1420755
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| ||||||||||| | || ||||||| | |||| ||| |||||| ||| ||
Sbjct 1420756 GATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCAC 1420815
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| || ||||| ||||| | |||||| ||||| || |||||
Sbjct 1420816 CTCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863
Score = 129 bits (142), Expect = 5e-25
Identities = 140/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 29602 TGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAAT 29661
|||||||| || || | || || | | ||| || |||||||| |||||| | ||||
Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510
Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACA 29721
| |||||||| || ||||| ||||||||||| || | ||| || ||| ||||||
Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570
Query 29722 GTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATC 29781
||||| ||| ||| ||||||||||| || ||||||||||| | || || ||||| ||
Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630
Query 29782 TGCATT 29787
||||||
Sbjct 1420631 TGCATT 1420636
>seq1104
Length=1074228
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656
|||| |||||||| ||||| | || ||||| ||| || || ||||||||||| | |
Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975
Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716
| | | || ||||| || || || ||||| ||||| || | || || ||| | |
Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | ||||| || ||||| ||||| || || || || || || | |||||| ||||
Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855
Query 29777 ATATCTGCAT 29786
| ||||||||
Sbjct 390854 AGATCTGCAT 390845
>seq514
Length=2723796
Score = 86.0 bits (94), Expect = 5e-12
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618
|| || | ||| |||| ||||| || ||||| ||||| || || || ||||| |||| |
Sbjct 26482 CCGCCTCGCAAGCGCAATACCAAGTGCAGCGTAGATTCCTTCTGGATATTATAGTCCGAC 26541
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|||| | | ||| || | ||| || |||||| | ||||||||||||||||| |||||
Sbjct 26542 AATG-TCCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGATCTGGCGG 26600
Query 29679 AATACC 29684
||| ||
Sbjct 26601 AATTCC 26606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384892855656051
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