Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq52431 131 2e-25 seq5117 125 7e-24 seq5959 122 8e-23 seq68007 113 4e-20 >seq52431 Length=384 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | ||||||||| | ||||| ||| ||||| ||||| |||||||| ||| Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || ||||||||||||||| | |||||||| |||||||| ||||| Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||||| || | | ||| | ||||||| | ||| ||| Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || || || | || || ||||| || ||||| Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq5117 Length=2329582 Score = 125 bits (138), Expect = 7e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| ||||| | || ||||| ||||| ||||| ||||| || ||||| ||| Sbjct 1167845 CAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACCGTC 1167786 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 |||||||||||| |||||| |||||| | || ||||| ||||| || ||||| ||||| Sbjct 1167785 TTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTGTC 1167726 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 |||||| ||| | | || | |||||||| | || ||||| | || | || Sbjct 1167725 CTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGT 1167666 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || ||||| ||||| || || || |||||| Sbjct 1167665 CTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1167632 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| ||||| | ||| ||||||||||| || |||||||| || ||||| ||| Sbjct 1167389 CAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167330 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 |||||| ||||| || ||| |||||| | || ||||||||||| || ||||||||||| Sbjct 1167329 TTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTC 1167270 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 |||||| || | | || | ||||||| | || || || | || | || Sbjct 1167269 TTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGT 1167210 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || || || ||||| ||||| || |||||| Sbjct 1167209 CTTTCCTGTTAAAGTTTTGACGAAAATCTGCATA 1167176 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| ||||| | ||| || || | || ||||| || || || || ||||| Sbjct 1165022 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1164963 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| ||||| || |||||| |||||| | ||| ||||| ||||| Sbjct 1164962 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGGG 1164903 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| |||||| ||| | | || | |||||| | | |||||| Sbjct 1164902 ATGCCTTCTTTGTCCTGAATTTTCGCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTACC 1164843 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 1164842 TCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 Score = 114 bits (126), Expect = 1e-20 Identities = 155/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTT-TTGTATGTTGTAATCGCTCATTGTGCTCGAGT 137257 |||||||||||| | |||||||| || ||| || |||||||| || ||||| || Sbjct 1167161 CAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGT 1167102 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 ||||||||||||| || ||| |||||| | |||||||||||||| || || ||||||| Sbjct 1167101 CTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGT 1167042 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | |||||| || | | || | ||||||| | || || || | || | | Sbjct 1167041 CTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAG 1166982 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | ||||| || | ||||| ||||| || |||||| Sbjct 1166981 TTTTGCCAGTGAGAGTTTTGACGAAAATCTGCATA 1166947 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||||||| | ||| ||||| | ||| |||||||| || |||||||||| | Sbjct 1165250 CCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAAT--CAG 1165193 Query 137245 ATTGTGCTCG--AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || | | ||| |||||||| ||||| || || |||||| | |||||||| |||| Sbjct 1165192 ATAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAG 1165133 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| || || |||||| ||| | | || | |||||||| | || | Sbjct 1165132 GGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1165073 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| | || | ||||| || ||||| ||||| || || || |||||| Sbjct 1165072 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1165023 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| ||||| | ||| || || | || ||||| || || || || ||||| Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| ||||| || |||||| |||||| | |||||||| ||||| Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| |||||| ||| | | || | |||||||| | ||| ||| Sbjct 1167511 ATTCCTTCTTTGTCCTGAATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGACT 1167452 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||| || || || | |||||| || || || |||||| Sbjct 1167451 TCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCATA 1167404 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| |||||||||||| || || ||||| ||| || || | ||| |||||||| Sbjct 1168063 TGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGC 1168004 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| | ||||| | ||| ||||||||||| ||||| |||||||| ||||||| Sbjct 1168003 TTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTTT 1167944 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||||| | || | |||||| | | || || || | || | || || || || Sbjct 1167943 GCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGTG 1167884 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | || || || ||||| |||||| Sbjct 1167883 AGAGTCTTGACAAATATCTGCATA 1167860 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| ||||| | ||| |||||||| || ||||| ||||| | ||||| || Sbjct 1166932 CAAAACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGATAATGTGCGACCATC 1166873 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 ||| |||||||| || ||| |||||| | |||||||||||||| || || ||| Sbjct 1166872 TTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCT 1166818 >seq5959 Length=1871824 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | ||| | ||||| ||||| |||||| || || || |||||||| ||| Sbjct 1420637 CCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1420696 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| || |||||| ||||||||||||||||||| ||||| Sbjct 1420697 AGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGG 1420756 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || ||| | | || | || || | | ||| || Sbjct 1420757 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACC 1420816 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || || || | ||||| || || |||||||| Sbjct 1420817 TCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || ||||||||||||||| | |||||||| |||||||| ||||| || || |||||| Sbjct 1420481 TCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTG 1420540 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||||| || | | ||| | ||||||| | ||| ||||||| ||| | Sbjct 1420541 TCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTAATG 1420600 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || | || || || || |||||||| Sbjct 1420601 GTTTTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 1420635 >seq68007 Length=840 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | |||| ||| | ||||| ||| ||||| ||||| ||||| || ||| Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || |||||||| |||||| | |||| |||||| ||||| || || Sbjct 179 AGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGA 120 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||||| || | | ||| | ||||||| | ||| ||| Sbjct 119 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 60 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || || || | ||||||||||| || ||||| Sbjct 59 TCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | || |||||||| || | ||||||||| ||||| |||||||||||| Sbjct 467 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 408 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| || ||||| || || |||| | ||| || ||||| || || Sbjct 407 AGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGG 348 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||||| ||||| | ||| | || || | | ||| ||| Sbjct 347 ATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACT 288 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || |||||||| | || || || || |||||||| Sbjct 287 TCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488119510225200