Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5117 123 2e-23 seq1104 109 5e-19 >seq5117 Length=2329582 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| |||||||| || || ||| ||| || ||| Sbjct 1164773 AAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCAAGC 1164714 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | || |||||||| || ||||||||||||||||| ||| Sbjct 1164713 TGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGAATC 1164654 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | ||||| ||||||| | ||| || |||| ||| | ||| || ||| Sbjct 1164653 TTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTTTCCG 1164594 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGG 133662 |||| || ||||| ||||||||||||| Sbjct 1164593 GTCAACGTCTTTACAAAAATCTGCATGG 1164566 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || |||||||| || |||||||| | || | | | || ||||| Sbjct 1165229 AAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCA-TCTTCGAG 1165171 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || | || |||||| || |||||||| |||||||| || ||| Sbjct 1165170 CTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCC-TGAA 1165112 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||| | |||||| | | ||| || || | |||| ||| || | Sbjct 1165111 TTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTC 1165052 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| |||||| || ||||||||||| Sbjct 1165051 CCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| ||||| || ||||||||||| || ||| ||| |||||| Sbjct 1167382 AAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTCTTCGAGC 1167323 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | | ||| || |||||||| || ||||| ||||| ||| Sbjct 1167322 TGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTCT-TGAAT 1167264 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | ||| | ||||| | | ||| || || | |||| ||| || || Sbjct 1167263 TTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGTCTTTCC 1167204 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | |||||| |||||||||||||| Sbjct 1167203 TGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCT-GTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAG 133513 ||||||| || || || |||| | ||||||||||| || ||| ||| ||||| Sbjct 1167154 AAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGTCTTCGAG 1167095 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | | |||||| |||||||| || || || ||||| ||| Sbjct 1167094 TTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGTCT-TGAA 1167036 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || || | | ||| | ||||| | | ||| || || | |||| ||||||| Sbjct 1167035 TTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAGTTTTGC 1166976 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| |||||||||||||| Sbjct 1166975 CAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || || || || || ||||| || ||| ||| ||| ||||| Sbjct 1167838 AAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGTGCGACC-GTCTTCGAG 1167780 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | | ||| || || ||||| || ||||||||||| ||| Sbjct 1167779 TTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCC-TGAA 1167721 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||| | |||||| | | ||| || || | |||| ||| || | Sbjct 1167720 TTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTC 1167661 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| |||||| || ||||||||||| Sbjct 1167660 CCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 >seq1104 Length=1074228 Score = 109 bits (120), Expect = 5e-19 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||||| || ||||||||| | ||| | ||||| ||||| ||||| ||| | | Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 |||||||||| || || || ||||| || |||||||| |||||| ||| | | || Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 | | ||||||| || ||| || || | ||| | ||| || || || || ||||| || | Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 133651 AAATCTGC---ATGGCTTA 133666 | |||||| |||||||| Sbjct 390854 AGATCTGCATAATGGCTTA 390836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483000761709640