Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5117 123 2e-23 seq52431 111 1e-19 seq5959 111 1e-19 seq68007 105 4e-18 seq1104 87.8 1e-12 >seq5117 Length=2329582 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||| | ||||| || | || || || || || || ||||| || Sbjct 1167632 ACCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGA 1167573 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | ||| ||||| ||||| ||||| | ||||||||| | || Sbjct 1167572 GAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGG 1167513 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| | || ||||| || | ||||| || ||| | Sbjct 1167512 GATTCCTTCTTTGTCCTGAATTTT-AGCTTTAACATTCTCGATCGTGTCTGATGCTTCGA 1167454 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||||||||| || | ||||| ||||| ||||||||| Sbjct 1167453 CTTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCATA 1167404 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| | ||| |||||||| || |||||||| || | ||||||| |||| Sbjct 1167388 AAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGTCCGTCT 1167329 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||||||||||| ||||| | ||| ||||| | || | |||||||||||| Sbjct 1167328 TCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTGTCT 1167269 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||||||| ||| || | || | ||||| | || || || | ||||| || Sbjct 1167268 TGAATTTTCGCCTTC-ACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATGGT 1167210 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||||||| ||||| || || ||||||||| Sbjct 1167209 CTTTCCTGTTAAAGTTTTGACGAAAATCTGCATA 1167176 Score = 107 bits (118), Expect = 1e-18 Identities = 155/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGT-GCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 || || ||||||| || | | ||| ||| || |||||||| || | ||||||| |||| Sbjct 1167160 AAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATGTGCGTCCGTC 1167101 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || | ||||||||||||||| ||||| | ||||||||| | || | ||| |||||||| Sbjct 1167100 TTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCTCTTTGTC 1167041 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 ||||||| ||| || | || | ||||| | || || || | ||||| | Sbjct 1167040 TTGAATTTTCGCCTTC-ACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGTGATAG 1166982 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || | ||||| || || ||||||||| Sbjct 1166981 TTTTGCCAGTGAGAGTTTTGACGAAAATCTGCATA 1166947 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| | |||||||| | || ||||| || ||||||||||| || Sbjct 1165251 ACCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGA 1165192 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||||||||| || ||||| | |||||||||| | || Sbjct 1165191 TAGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 1165132 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| | || |||| || | ||||| | || | Sbjct 1165131 GATTCCTTCCTTATCCTGAATTTT-GGCTTTGACATTCTCGATCGTGTCTGACGCCTCAA 1165073 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || ||||| ||||| ||||||||| Sbjct 1165072 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1165023 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||| | ||||| || | || || || || || || ||||| || Sbjct 1165023 ACCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGA 1164964 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | ||| ||||| ||||| ||||| | || ||||| | || Sbjct 1164963 GAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGATCCGGAGG 1164904 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||||| | || || | || | ||||| | ||| | Sbjct 1164903 GATGCCTTCTTTGTCCTGAATTTTC-GCTTTGACGTTCTCGATCGTGTCCGAAGCTTCTA 1164845 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || || ||||| || ||||||||||| Sbjct 1164844 CCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAACGAAGATCTGCAT 1164796 >seq52431 Length=384 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| || |||| ||| || ||| || ||||| |||||||| ||||| Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | |||||| || |||||||||| ||||||||||||| | || Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||| ||| |||| || | ||||| | ||| || Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTC-ACATTTTCTATTGTGTCTGAAGCTTCAAC 126 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || | || || || ||||||||||| Sbjct 125 TTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq5959 Length=1871824 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||||| || | ||| || || ||| || || |||||||| |||||| Sbjct 1420637 CCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1420696 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||| ||| ||||| ||||| |||| ||| ||||||||| | || Sbjct 1420697 AGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGG 1420756 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || | || |||| || | || || | |||||| Sbjct 1420757 ATACCTTCTTTGTCTTGGATCTT-AGCTTTGACATTCTCTATAGTATCAGAAGCTTCCAC 1420815 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 1420816 CTCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Score = 86.0 bits (94), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 33565 TGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAA 33624 || |||||||| ||||| || || | | || || | |||||| || |||||||||| | Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 33625 CGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-AC 33683 |||||||||||| | || | || |||||||| ||||| ||| |||| || | Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTC-ACATTTTCTAT 1420569 Query 33684 GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGAT 33743 ||||| | ||| || |||| || || ||||| || || | || || |||||||| Sbjct 1420570 TGTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGAT 1420629 Query 33744 CTGCAT 33749 ||||| Sbjct 1420630 TTGCAT 1420635 >seq68007 Length=840 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || || || ||||| ||||| || ||||| || || | | || ||| Sbjct 221 ACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAAAGAGTTCTGCCATCCTCC 162 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| || |||||||||||||| || |||||| | || | || |||||||| Sbjct 161 AGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGAATTCCCTCTTTGTCCTGG 102 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||| |||| || | ||||| | ||| || |||| ||||| ||||| Sbjct 101 ATTTTGGCCTTC-ACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTTTT 43 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | |||||||| ||||||||||| Sbjct 42 ACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq1104 Length=1074228 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||||||||| || ||||| | || |||| ||||| || || || | Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | ||||| |||||| | || | || || ||||| || || | | ||||| Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTT-GGCCTTAACATTC 390916 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||||| | || || |||| || || || ||||| || | ||||| ||| Sbjct 390915 TCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACA 390856 Query 33739 AAGATCTGCATA 33750 |||||||||||| Sbjct 390855 AAGATCTGCATA 390844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328425533373120