Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5117 138 3e-27 seq5959 134 3e-26 seq68007 102 2e-16 >seq5117 Length=2329582 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||| || ||||| || ||||| ||||| |||| || || ||| ||| Sbjct 1167864 CAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCGGAC 1167923 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| ||||| |||||| |||||||| ||||| || ||| || || || Sbjct 1167924 ACGATCGAGAATGTAAAAGCAAAA-ATTCAAGACAAAGAGGGCATTCCTCCCGATCAACA 1167982 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| || ||||| || ||||| | || || ||| | |||||| |||| ||||| | Sbjct 1167983 AAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAATAT 1168042 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| ||||| ||||||||||| | ||||| || Sbjct 1168043 CCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 1168082 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | |||||||| || ||||| ||||| || || ||| ||| Sbjct 1167180 CAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCAGAC 1167239 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| || |||||||| |||||||| ||| || || || Sbjct 1167240 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAACAG 1167299 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||| ||| | ||||| ||| | || ||| | |||||||| | Sbjct 1167300 AGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAATATT 1167359 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || | || | |||||||||||||| Sbjct 1167360 CAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCG 1167397 Score = 113 bits (124), Expect = 1e-19 Identities = 157/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || ||||| ||||| ||||| || || ||| ||| Sbjct 1166951 CAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCAGAC 1167010 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| || |||||||| ||||| || ||| || || || Sbjct 1167011 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAGCAG 1167070 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||| || | ||||| ||| | || ||| | |||||||| | Sbjct 1167071 AGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAATATT 1167130 Query 206353 CA-GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||| || ||||| | || | |||||||||||||| Sbjct 1167131 CAAGAAGGAATCTACGTTACATTTAGTTTTGAGACTTCG 1167169 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || ||||| || ||||| |||||||| || || ||| Sbjct 1165027 CAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCAGAC 1165086 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| ||||| || || |||||||| || || || Sbjct 1165087 ACGATCGAGAATGTCAAAGCCAAA-ATTCAGGATAAGGAAGGAATCCCTCCAGATCAGCA 1165145 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | |||||||||||||| ||| | |||||||| | ||| | | ||||||||| | Sbjct 1165146 GAGGTTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGAACTCTATCTGATTACAACAT 1165205 Query 206352 CCAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 1165206 TCAGAAAGAATCAAC 1165220 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || |||||||||||| ||||||| ||| || ||| Sbjct 1167408 CAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCAGAC 1167467 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| | |||||| ||| ||||| || ||||||||||| ||||| || Sbjct 1167468 ACGATCGAGAATGTTAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCTCCGGATCAGCA 1167526 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || |||||||| | ||||| || | ||| | | ||||| || | Sbjct 1167527 GAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAATAT 1167586 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| || || || | ||| | ||| Sbjct 1167587 TCAGAAGGAATCGACCTTGCACTTGGTT 1167614 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||| | ||||||||||| ||||| |||||||||| ||| ||||| | |||||| Sbjct 1168082 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGT 1168023 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||| || || || ||||| || ||||| || || | ||||||| Sbjct 1168022 TCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGA 1167977 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 ||| | ||| | |||||| || || || ||||||| ||| ||||||| ||| || | ||| Sbjct 1164783 TCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCC 1164724 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| ||||||||||| |||||||| | ||||| || Sbjct 1164723 GTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTG 1164685 >seq5959 Length=1871824 Score = 134 bits (148), Expect = 3e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| |||||||| |||||| | || |||||| |||||| || | || Sbjct 1420848 AAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCTGATACTATAGAGAAT 1420789 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| || || || ||| | || ||||| Sbjct 1420788 GTCAAAGCTAA-GATCCAAGACAAAGAAGGTATCCCTCCAGATCAGCAACGTCTGATCTT 1420730 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| ||||||||||||| ||| | |||| |||||| ||||||| ||||| Sbjct 1420729 TGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAACATCCAGAAGGAGTC 1420670 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| ||||| || ||| | | |||||| Sbjct 1420669 TACACTTCATCTAGTTCTACGTCTTCGA 1420642 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| | | ||| || ||||| |||||||| ||||||| || ||||| | | ||| Sbjct 1420642 TCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1420701 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||| |||||||| || ||||| || ||||| ||| Sbjct 1420702 TCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGA 1420747 >seq68007 Length=840 Score = 102 bits (112), Expect = 2e-16 Identities = 152/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| || || | ||||| ||| ||| || || | ||| Sbjct 256 AAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTCGGATACCATAGAAAAC 315 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 ||||| || ||| || ||||| ||||||||||| || || |||| || || || Sbjct 316 GTAAAAGCCAAA-ATACAAGATAAAGAAGGAATCCCACCTGA---TCAACAGCGTTTAAT 371 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 |||||| || || ||| | ||||| || |||||| | ||||||||||| |||| || || Sbjct 372 CTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAACATCCAAAAGGA 431 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||| | ||||| ||||||| Sbjct 432 ATCTACACTCCACTTAGTTTTACGACTTCG 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180768258946631