Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq5117 138 3e-27
seq5959 134 3e-26
seq68007 102 2e-16
>seq5117
Length=2329582
Score = 138 bits (152), Expect = 3e-27
Identities = 164/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||||||| ||| || ||||| || ||||| ||||| |||| || || ||| |||
Sbjct 1167864 CAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCGGAC 1167923
Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| ||||| |||||| |||||||| ||||| || ||| || || ||
Sbjct 1167924 ACGATCGAGAATGTAAAAGCAAAA-ATTCAAGACAAAGAGGGCATTCCTCCCGATCAACA 1167982
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|||||| || ||||| || ||||| | || || ||| | |||||| |||| ||||| |
Sbjct 1167983 AAGACTGATTTTCGCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAATAT 1168042
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
||||||||| ||||| ||||||||||| | ||||| ||
Sbjct 1168043 CCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 1168082
Score = 118 bits (130), Expect = 3e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| | |||||||| || ||||| ||||| || || ||| |||
Sbjct 1167180 CAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCAGAC 1167239
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| |||| || ||| || |||||||| |||||||| ||| || || ||
Sbjct 1167240 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAACAG 1167299
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | ||||| |||||||| ||| | ||||| ||| | || ||| | |||||||| |
Sbjct 1167300 AGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAATATT 1167359
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| || || | || | ||||||||||||||
Sbjct 1167360 CAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCG 1167397
Score = 113 bits (124), Expect = 1e-19
Identities = 157/219 (72%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| ||||| || ||||| ||||| ||||| || || ||| |||
Sbjct 1166951 CAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCAGAC 1167010
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| |||| || ||| || |||||||| ||||| || ||| || || ||
Sbjct 1167011 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAGCAG 1167070
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | ||||| |||||||| || | ||||| ||| | || ||| | |||||||| |
Sbjct 1167071 AGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAATATT 1167130
Query 206353 CA-GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||| || ||||| | || | ||||||||||||||
Sbjct 1167131 CAAGAAGGAATCTACGTTACATTTAGTTTTGAGACTTCG 1167169
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| |||||| | || ||||| || ||||| |||||||| || || |||
Sbjct 1165027 CAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCAGAC 1165086
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || ||||| ||| ||||| || || |||||||| || || ||
Sbjct 1165087 ACGATCGAGAATGTCAAAGCCAAA-ATTCAGGATAAGGAAGGAATCCCTCCAGATCAGCA 1165145
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|| | |||||||||||||| ||| | |||||||| | ||| | | ||||||||| |
Sbjct 1165146 GAGGTTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGAACTCTATCTGATTACAACAT 1165205
Query 206352 CCAGAAAGAGTCTAC 206366
|||||||| || ||
Sbjct 1165206 TCAGAAAGAATCAAC 1165220
Score = 93.3 bits (102), Expect = 1e-13
Identities = 147/208 (71%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| |||||| || || || |||||||||||| ||||||| ||| || |||
Sbjct 1167408 CAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCAGAC 1167467
Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| | |||||| ||| ||||| || ||||||||||| ||||| ||
Sbjct 1167468 ACGATCGAGAATGTTAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCTCCGGATCAGCA 1167526
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|| | ||||| || |||||||| | ||||| || | ||| | | ||||| || |
Sbjct 1167527 GAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAATAT 1167586
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||| || || || | ||| | |||
Sbjct 1167587 TCAGAAGGAATCGACCTTGCACTTGGTT 1167614
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|| ||||| | ||||||||||| ||||| |||||||||| ||| ||||| | ||||||
Sbjct 1168082 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGT 1168023
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||| || || || ||||| || ||||| || || | |||||||
Sbjct 1168022 TCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGA 1167977
Score = 84.2 bits (92), Expect = 5e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816
||| | ||| | |||||| || || || ||||||| ||| ||||||| ||| || | |||
Sbjct 1164783 TCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCC 1164724
Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
||||| ||||||||||| |||||||| | ||||| ||
Sbjct 1164723 GTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTG 1164685
>seq5959
Length=1871824
Score = 134 bits (148), Expect = 3e-26
Identities = 156/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| |||||||| |||||| | || |||||| |||||| || | ||
Sbjct 1420848 AAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCTGATACTATAGAGAAT 1420789
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| || || || ||| | || |||||
Sbjct 1420788 GTCAAAGCTAA-GATCCAAGACAAAGAAGGTATCCCTCCAGATCAGCAACGTCTGATCTT 1420730
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|| |||||||| ||||||||||||| ||| | |||| |||||| ||||||| |||||
Sbjct 1420729 TGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAACATCCAGAAGGAGTC 1420670
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391
||| ||||| || ||| | | ||||||
Sbjct 1420669 TACACTTCATCTAGTTCTACGTCTTCGA 1420642
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|||||| | | ||| || ||||| |||||||| ||||||| || ||||| | | |||
Sbjct 1420642 TCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1420701
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|||||||||||||| |||||||| || ||||| || ||||| |||
Sbjct 1420702 TCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGA 1420747
>seq68007
Length=840
Score = 102 bits (112), Expect = 2e-16
Identities = 152/210 (72%), Gaps = 8/210 (4%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || ||||| || || | ||||| ||| ||| || || | |||
Sbjct 256 AAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTCGGATACCATAGAAAAC 315
Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300
||||| || ||| || ||||| ||||||||||| || || |||| || || ||
Sbjct 316 GTAAAAGCCAAA-ATACAAGATAAAGAAGGAATCCCACCTGA---TCAACAGCGTTTAAT 371
Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360
|||||| || || ||| | ||||| || |||||| | ||||||||||| |||| || ||
Sbjct 372 CTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAACATCCAAAAGGA 431
Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| || ||| | ||||| |||||||
Sbjct 432 ATCTACACTCCACTTAGTTTTACGACTTCG 461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180768258946631
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |