Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5117 109 5e-19 seq68007 82.4 7e-11 seq4102 82.4 7e-11 >seq5117 Length=2329582 Score = 109 bits (120), Expect = 5e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||| ||||| | ||||| | || ||||| || Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || |||||| || ||||| ||||| || |||||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | || | | ||| ||||| |||||||| | | | |||| | |||||| Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTG--ATTACA 1167354 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||||||||||||||||||| | ||||| || || ||| Sbjct 1167355 ATATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGA 1167392 Score = 102 bits (112), Expect = 7e-17 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || || ||| | ||||| | || ||||| || Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || |||||| || ||||||||||| || ||||||||| Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAG 1167067 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || ||| | || | | ||| |||||||||||||| | | | |||| ||||||| Sbjct 1167068 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTC--TGATTACA 1167125 Query 25353 ATATTCAA-AAAGAATCCACCATTCATTTAGTGTTAAGA 25390 |||||||| || ||||| || | |||||||| || ||| Sbjct 1167126 ATATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAGA 1167164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| | || || ||| ||||||| | ||||||||||| Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| |||||| || ||||| || || || || |||||| Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | || || ||||| ||||| | | | | || ||||| ||| Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || ||||| ||| | || || || | | ||| |||| || Sbjct 1167585 ATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1167631 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || ||||| | ||||| | ||||| || || Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| |||||| || || || || || || || ||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || ||| | || | | || |||||||||||||| | | | | |||| ||||| | Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTC--TGATTATA 1167810 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 | |||||||| |||||||| | ||||| || || || Sbjct 1167811 ACATTCAAAAGGAATCCACTCTGCATTTGGTTTTGAG 1167847 >seq68007 Length=840 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || |||||||| | || || ||| | ||||| | ||||| ||||| Sbjct 12 CATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTC 71 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || ||||| || |||||||| || || || ||||| Sbjct 72 AGACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCA 131 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | |||| | ||||||||||| || |||| |||| | | ||| || || Sbjct 132 ACAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAA 191 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 |||||||| ||||| || ||||| Sbjct 192 CATTCAAAAGGAATCAACACTTCAT 216 >seq4102 Length=4342353 Score = 82.4 bits (90), Expect = 7e-11 Identities = 217/326 (67%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAG-CGCTAACAAGCGGATAAAAGTTT 137448 |||| |||||||||||||| ||| ||| || | | || | |||||||| || Sbjct 712807 TACCAATAGGTCTGTGTTTTTGATTAGATGCTTTCGTCTCTGGGATA-GGATAAAAATTA 712749 Query 137449 GCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCG 137508 |||| || | | ||| ||||| |||||||| | | | |||| | | || ||| Sbjct 712748 ACGTCGATGACTTTATCTAGATTACGAGTAACGATTTTTGCCACTGTTTTAAGTTTATCG 712689 Query 137509 AAATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTG 137568 |||||||| |||| | | | | || |||| |||| || || ||||| ||||| ||| Sbjct 712688 AAATCGAAAGTTTTGGTGTCTGTATTGACAAACATATTAACAGCGATAGACGCTAAATTG 712629 Query 137569 CATACGGCCGTTTCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTT 137628 || || || ||| | | |||| |||||||| | || ||||||||| | Sbjct 712628 CACACAGCAACTTCCCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTGCAT 712569 Query 137629 CGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGAC-GTGATCTTTATATATCAT 137687 ||| || |||| | ||||| | || ||| | || |||||||| || | ||| Sbjct 712568 TTGATAGTGCCTAAATGTTGGTGATT-TGATTTTCGATTACAATGATCTTTGTAAAGCAT 712510 Query 137688 ATACGGAGTTCCGGTTTCGACTTGAG 137713 ||| || ||||| ||||| |||||| Sbjct 712509 ATAAGGTGTTCCAGTTTCTCCTTGAG 712484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444707663039520