Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5117 125 6e-24 seq52431 107 2e-18 seq1104 98.7 9e-16 seq68007 96.9 3e-15 seq5959 89.7 5e-13 >seq5117 Length=2329582 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | |||||| |||||||| | || |||||||||||||| ||||| | | Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || || || || ||||| ||||| | ||| || || | |||| Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| ||| || || | | | | | |||||| || || || Sbjct 1167739 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1167681 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || |||||||||||||| ||||| |||||||| Sbjct 1167680 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | |||||||| || || || || |||||||||||||| | Sbjct 1165250 CCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGAT 1165191 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || || ||||| || || || || ||||||| |||||| || | ||| Sbjct 1165190 AGAGTTCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGG 1165131 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| || || | | | | | |||||| || || || Sbjct 1165130 ATTCCTTCCTTATCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1165072 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || |||||||||||||| ||||| |||||||| Sbjct 1165071 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTT-TTGAATGTTGTAATCGGC 35568 ||||| || | ||||| || |||||||||||| ||||| |||||| |||||||| | Sbjct 1167175 CCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGA 1167116 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || |||| || || || || || ||||| ||||| | |||||| || | ||| Sbjct 1167115 CAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 1167056 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 || | ||| |||| | ||| ||| | ||||| | | | ||||| | || | Sbjct 1167055 AATACCCTCTTTGT-CTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGA 1166997 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| ||||| ||||| || || | |||||| || || |||||||| Sbjct 1166996 CCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | | ||||| || || || ||||| ||||| || ||||| | Sbjct 1167631 CCACCTCGCAAACGGAGAACCAAGTGCAAGGTCGATTCCTTCTGAATATTATAATCTGAG 1167572 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || ||||| || ||||| ||||||| |||||| |||| ||| Sbjct 1167571 AGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 1167512 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCAC 35688 | | || |||||| ||| ||| |||| | || | | |||||| | ||| || Sbjct 1167511 ATTCCTTCTTTGTCC-TGAATTTTAGCTTTAACATTCTCGATCGTGTCTGATGCTTCGAC 1167453 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||||||||||| || | ||||| ||||| |||||||| Sbjct 1167452 TTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGACAAAAATCTGCAT 1167405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || || ||||| |||| ||| ||||| |||| || || ||||| || || || Sbjct 1168051 TCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAA 1167992 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGT 35664 |||| | || || || | ||||| || ||| ||||| ||| |||||||| | | | Sbjct 1167991 ATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCT-TGAATTTTTGCTTTTACATT 1167933 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | || ||||||| ||||| ||||| || || | ||| || || Sbjct 1167932 CTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGAC 1167873 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 1167872 AAATATCTGCAT 1167861 >seq52431 Length=384 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | | ||| |||| ||| | || ||||||||||||||||| |||| Sbjct 306 TTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGG 247 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || || || ||||| ||||| |||| |||||||| || | || Sbjct 246 AAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAG 187 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| ||||| ||| || ||||| | || | | ||||| | ||| | Sbjct 186 GAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAA 127 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | ||||| ||||||||||| | ||| ||||| || |||||||| Sbjct 126 CTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq1104 Length=1074228 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||||| | || ||| | || |||||||| || || || || Sbjct 391035 CCTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAG 390976 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | |||||| || || | || | | |||||||||| |||||| ||| | | | Sbjct 390975 ATGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTC 390916 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | || || || |||||||| | ||||||||| Sbjct 390915 TCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACA 390856 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 390855 AAGATCTGCAT 390845 >seq68007 Length=840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||| || |||| | |||| | || ||||| || || || ||||| Sbjct 203 TCCTTTTGAATGTTATAGTCGGAAAGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAA 144 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | |||| | ||| |||||| ||| || ||||| | || Sbjct 143 ATCAAACGTTGTTGATCTGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTT 84 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| || || | ||||| ||||||||||| | |||||| || Sbjct 83 TCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACG 24 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 23 AAGATCTGCAT 13 >seq5959 Length=1871824 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 ||||||||||| |||| | |||| | || || || || ||||| ||||| |||| Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC 35671 |||||||| || | ||||| | ||| |||||| ||| || ||||| | || | | Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 35672 GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 ||||| | ||| || || | || || ||||| || || | ||| |||||||| || Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 35732 TGCATTC 35738 ||||||| Sbjct 1420631 TGCATTC 1420637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450401911075880