Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq52431 156 4e-33 seq68007 141 9e-29 seq5117 136 4e-27 seq5959 114 1e-20 >seq52431 Length=384 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || ||||| || || || || ||||||||||||||||||||||||||| Sbjct 306 TTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGG 247 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || || ||||| || |||||||||| |||||||||||| || | Sbjct 246 AAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAG 187 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || ||||| ||||| ||||| || || || | |||||| || | ||| | Sbjct 186 GAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAA 127 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||||||||| || | ||| || ||||| || ||||| Sbjct 126 CTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq68007 Length=840 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || |||| || || || || || ||||||||||||||||| |||||| Sbjct 241 TTCCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGG 182 Query 134545 CAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || || || | || || || |||||||| |||||||||||||| || ||||| || Sbjct 181 AAAGAGTTCTGCCA-TCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGG 123 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || ||||| || || ||||| || || || | |||||| || | ||| Sbjct 122 GGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCA 63 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||||||||| || | |||||| ||||| || ||||| Sbjct 62 ACTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| || || | ||| || || ||||||||||| |||||||| ||| | Sbjct 467 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 408 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || |||||||| ||||| || || |||||||| ||||| || || Sbjct 407 AGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGG 348 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| ||||| ||| || || | || || || | ||| || Sbjct 347 ATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACT 288 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || ||||| ||||| ||||| | ||| || || |||||||||||| Sbjct 287 TCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCATT 240 >seq5117 Length=2329582 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||| || | || | |||||||| |||||||| ||||| || | ||| | || | Sbjct 1167394 AGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATG-TGCG 1167336 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| ||||||||||| || ||||| ||||| | ||| |||||||| || || ||||| Sbjct 1167335 TCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCTTC 1167276 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 ||| ||||||||||| || || || | |||||| || | || || || | || Sbjct 1167275 TTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATGT 1167216 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||||||||| |||||||| ||||| Sbjct 1167215 GATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 125 bits (138), Expect = 7e-24 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTT-TTGAATGTTGTAGTC-GCCAACGGTGT 134553 |||| ||| || | |||| ||| |||||||| |||||| ||||| || | ||| | || Sbjct 1167166 AGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGACAATG-TGC 1167108 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| ||||| ||||| || ||||| ||||| | |||||||||||| || || || | Sbjct 1167107 GTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGAATACCCT 1167048 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 |||| ||||||||||| || || || | |||||| || | || || || | | Sbjct 1167047 CTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAATG 1166988 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| || || | |||||| |||||||| ||||| Sbjct 1166987 TGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 125 bits (138), Expect = 7e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA--GTCGTCGAGCT 134568 || || |||||||||||||||||||| || | | || ||||| || ||| ||||| | Sbjct 1167835 TGCAGAGTGGATTCCTTTTGAATGTTATAAT--CAGACAGTGTGCGACCGTCTTCGAGTT 1167778 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || ||||| ||||| | ||| ||||| || || || ||||| || || ||||||| Sbjct 1167777 GTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTGAATTT 1167718 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | |||||| || | ||||| |||| || || || | || ||||| || || | Sbjct 1167717 TGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTCCCG 1167658 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| || ||||| ||||| Sbjct 1167657 TCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| ||||| ||||| | || ||||| || || ||||| || || || ||||||||| Sbjct 1168090 TTTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCG 1168031 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | || | ||| ||||| || ||||| || ||||||| | || |||||||| Sbjct 1168030 GACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGA 1167971 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| ||||| |||||||||||| ||| || || | ||||| || | || Sbjct 1167970 GGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAAGCCTCG 1167911 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || | ||| || || || || ||||| Sbjct 1167910 ACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 1167861 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || ||||| || ||||||||||| || | || | || ||||||||||| || Sbjct 1165220 GTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCGAGCTGTTTTCCG 1165161 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || ||||| | ||||||||| || || || ||||| || || |||||||| |||| Sbjct 1165160 GCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTG 1165101 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| |||| || || || | || ||||| || || || |||||| Sbjct 1165100 ACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTCCCGTCAAAGTT 1165041 Query 134697 TTAACGAAAATTTGCAT 134713 || || ||||| ||||| Sbjct 1165040 TTGACAAAAATCTGCAT 1165024 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||| ||||| || || || | || | ||| || || || || || Sbjct 1164992 GTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCA 1164933 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| ||||| | || ||||| || || ||||||||||| || |||||||| |||| Sbjct 1164932 GCAAAGATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTCGCTTTG 1164873 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | ||| || || | |||||| || || || || || ||| Sbjct 1164872 ACGTTCTCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTT 1164813 Query 134697 TTAACGAAAATTTGCATT 134714 |||||||| || |||||| Sbjct 1164812 TTAACGAAGATCTGCATT 1164795 >seq5959 Length=1871824 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 134529 TGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAA 134588 ||||||||||||||| || || | || || || ||||| || |||||||||| | Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 134589 CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT 134648 ||||||||||| || || || || ||||| || || ||||| || || || | | Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 134649 GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATT 134708 ||||| || | ||| || || |||||||||||||| || || | ||| || || || ||| Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 134709 TGCATT 134714 |||||| Sbjct 1420631 TGCATT 1420636 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || || | || || || || || || ||||| || |||||||||||| Sbjct 1420635 TTCCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGG 1420694 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || || || || || || || ||||| |||| ||| |||||||| || | Sbjct 1420695 AGAGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAG 1420754 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| ||||| || || |||||| || | || || || | ||||| Sbjct 1420755 GGATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCA 1420814 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| |||||||| || || | ||||| || || |||||||| Sbjct 1420815 CCTCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504959265647720