Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4102 104 3e-17 seq2744 102 1e-16 seq5686 93.3 6e-14 >seq4102 Length=4342353 Score = 104 bits (114), Expect = 3e-17 Identities = 188/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 |||| | |||||||| || |||| |||| | || || |||| || || || || | Sbjct 711680 GAAATTACCTAGACATCTGCTGATTGTTAGTACAAGCGTTGAATAGCGTTGGTGAAGCAT 711621 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 | || || || |||||| | |||||| ||||| ||| || || || || | Sbjct 711620 GTGTAAAATATCGTTCAGACAAATAATTGTACGTTTCTATAACTTTGTCAATGTCGTTTT 711561 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 ||||| || | || || | |||||||||||| ||||| | || || | || || Sbjct 711560 CGTGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCAACTATCTTGCCAT 711501 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 | ||||||| ||| || | |||| || ||||| || |||| ||| || || ||| | Sbjct 711500 TGATTTTCAGCAGATAGCTTCTTTCGAGCGTTTTGAAACCAATATAATTATAACTAAAAT 711441 Query 70202 CTCTTTCGTAAATAATAACAGAATTTAGTTTATCC 70236 ||| ||||| || ||| |||||| |||| ||||| Sbjct 711440 CTCGATCGTATATTATAGCAGAATCTAGTCTATCC 711406 Score = 102 bits (112), Expect = 1e-16 Identities = 226/335 (67%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAA-CTTTCAGCTTCTGGAATAGGATAATAATTA 69174 |||| |||||||| ||| | | ||| || ||||| || |||| ||||||||| ||||| Sbjct 712807 TACCAATAGGTCTGTGTTTTTGATTAGATGCTTTCGTCT-CTGGGATAGGATAAAAATTA 712749 Query 69175 ATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGA 69234 | || || | ||||| ||||| || || | ||| |||| || ||||| Sbjct 712748 ACGTCGATGACTTTATCTAGATTACGAGTAACGATTTTTGCCACTGTTTTAAGTTTATCG 712689 Query 69235 AAATCAAA-----TCGTCCATCTATA-ACAAACATATTCAGTGCTACAGATGCTAGATTA 69288 ||||| || | || | ||| ||||||||||| | || | ||| |||| ||| Sbjct 712688 AAATCGAAAGTTTTGGTGTCTGTATTGACAAACATATTAACAGCGATAGACGCTAAATTG 712629 Query 69289 CAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 || || || || || || | | ||||| | || || ||||| ||||| || ||| Sbjct 712628 CACACAGCAACTTCCCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTGCAT 712569 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 |||||||| || | || ||| ||||| ||| ||||| || |||||||| ||| Sbjct 712568 TTGATAGTGCCTAAATGTTGGTGATTTGATTTTCGATTACAATGATCTTTGTAAAGCATA 712509 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 | || || |||||||| |||||| || ||| Sbjct 712508 TAAGGTGTTCCAGTTTCTCCTTGAGATCTGAGAAT 712474 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||||||||| || || ||| || ||||| || || | | ||| ||||| Sbjct 713379 AGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGCCTCACGTAGATATTG 713320 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || || ||||| | |||||| ||||| || | ||| || || || || || |||||| Sbjct 713319 CTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGC 713260 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGT 68877 |||||||| | || | |||||| | || || ||| || |||| | | Sbjct 713259 ATAGGTGCTATTAAAAGTGAATTTCTCACTCCGTGCTCCGCGATCTTCGCTTTCAATTCA 713200 Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 | ||||| ||| | ||| | |||| ||| ||||| | ||||||||| || || Sbjct 713199 TCCCAATTCCATAAATCCGTTGGTTTAACGTTCCACATATCGTATTGGAGGAT 713147 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 ||| | ||||| || | ||| || | |||||||| |||||||||||||| ||| || || Sbjct 712089 TTTCTCTTAAGTTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCTAAATAAATAGCA 712030 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 | |||| |||||||| |||||||||||||| Sbjct 712029 AATGCTCCTGGTCGTTTGTTTCCTCCCTGATC 711998 >seq2744 Length=396707 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 |||||||| |||||||| || || || || || || || ||||| ||||| | |||||| Sbjct 260636 TACATTTCAGAATGGATATTCTCTATGGCAATTTGGAAGCCGTAGAAACAACGTGCTTCG 260577 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | |||| || || || || || || || ||| ||||| || || ||||| | Sbjct 260576 GCGATTTTCACTTCCTGACTGAACCTCTCAATCAGATTCTCATTGACGATACCATCGGAA 260517 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGG 40073 ||||| || |||||||| ||||| ||||||||||| ||||||| Sbjct 260516 GCGGCGAAGAATGCCAAGACATGAGAGATAAAATATTTCTCATCGG 260471 >seq5686 Length=2262380 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 ||||||| | || |||||||||||||| | || |||||||| ||||| ||||||| | Sbjct 1101220 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAG 1101279 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||| || |||||||| | | ||| || || |||| || || || |||| | Sbjct 1101280 TTGCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1101339 Query 70454 ATTCTATAGTTGTAACTCC 70472 |||| || ||||| ||||| Sbjct 1101340 ATTCGATCGTTGTCACTCC 1101358 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 69506 TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGAC 69565 |||| ||| ||| |||||||| |||||| | ||| |||||||| || |||| ||| | Sbjct 1100151 TATAAAGC--TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGGCACTCATGTGGGC 1100208 Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625 |||| | ||| ||||||||||| | ||| |||||||| |||| ||| ||| |||| | Sbjct 1100209 ACATTAGGTTCCATACATCATCATCATAAACACGTTTCATGAATAAATCTGGAGTCCACA 1100268 Query 69626 G 69626 | Sbjct 1100269 G 1100269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686311953530040