Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq52431 131 1e-25
seq4102 129 5e-25
seq68007 125 6e-24
seq5959 122 7e-23
seq5117 116 3e-21
seq1104 102 7e-17
>seq52431
Length=384
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | ||||| |||| ||| | || || || |||||||| |||||||||
Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | || || || |||||||| || |||| |||||||| ||||| || ||
Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||||| || ||| ||| |||| |||||| ||||||| |||||||||
Sbjct 184 ATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACT 125
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | ||| ||||| ||||| ||||| ||||| |||||
Sbjct 124 TCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78
>seq4102
Length=4342353
Score = 129 bits (142), Expect = 5e-25
Identities = 159/214 (74%), Gaps = 5/214 (2%)
Strand=Plus/Minus
Query 130765 AAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTC 130824
||| || |||| || ||||| || ||||| || ||||||||| ||||||||| |||||
Sbjct 713356 AAACTCTCCAGACAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATAGATTC 713297
Query 130825 GTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATT 130884
||| || || || || || ||||| | || || ||||| ||| | ||| || |||||
Sbjct 713296 GTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGTGAATT 713237
Query 130885 ACGAAGACCGTGCGTCGTGATTTTTCGCTT-CAATTCATCCCAATCCCATAGAGAGGTAG 130943
| | |||||| || ||| || ||||| |||||||||||||| ||||| | || |
Sbjct 713236 TCTCACTCCGTGCTCCGCGATCTT-CGCTTTCAATTCATCCCAATTCCATAAATCCGTTG 713178
Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTAT 130977
|||| || |||||||||||| |||| || ||
Sbjct 713177 GTTTAAC---GTTCCACATATCGTATTGGAGGAT 713147
>seq68007
Length=840
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | || || || || || | ||||| || ||||| || ||||| |||
Sbjct 467 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 408
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | ||||||| |||||||| || ||| | || | |||||||||||| || ||
Sbjct 407 AGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGG 348
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || |||||||| || ||| ||| | | |||||| || || | |||||||||
Sbjct 347 ATTCCTTCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACT 288
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | |||||| || ||||| |||||||| ||||||||
Sbjct 287 TCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | |||| |||| ||| | || || || |||||||| || ||||||
Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180
Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| ||| || | || || || ||||| || || |||| | ||| |||||||| || ||
Sbjct 179 AGAGTTCTGC-CATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGG 121
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||||| || ||| ||| |||| |||||| ||||||| ||||||||
Sbjct 120 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAAC 61
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || || || | ||| ||||| |||||||| || ||||| |||||
Sbjct 60 TTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13
>seq5959
Length=1871824
Score = 122 bits (134), Expect = 7e-23
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| || || |||||||| || |||| |||||||| ||||| || || | ||||||||
Sbjct 1420481 TCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTG 1420540
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| |||| |||||| ||||||| ||||||||||| ||||| ||
Sbjct 1420541 TCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTAATG 1420600
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| |||||| || ||||| |||||||||||||||||
Sbjct 1420601 GTTTTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 1420635
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || ||||||||| | | | | ||||| || || || ||
Sbjct 1420667 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCCAGTTGCTTTCCA 1420726
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || ||||| || ||||| || || | ||| ||||| || |||||| |||
Sbjct 1420727 GCAAAGATCAGACGTTGCTGATCTGGAGGGATACCTTCTTTGTCTTGGATCTTAGCTTTG 1420786
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | |||| ||| || | ||||| || || ||||| || | ||| || || || |||
Sbjct 1420787 ACATTCTCTATAGTATCAGAAGCTTCCACCTCAAGAGTGATGGTTTTTCCAGTGAGGGTT 1420846
Query 27231 TTCACAAAGATTTGCAT 27247
|||||||||||||||||
Sbjct 1420847 TTCACAAAGATTTGCAT 1420863
>seq5117
Length=2329582
Score = 116 bits (128), Expect = 3e-21
Identities = 164/229 (72%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTT-TTGAATATTGTAGTCGCT 27079
|| ||||| | | ||| || |||||||||||||| || || |||||||||||| ||
Sbjct 1167175 CCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGA 1167116
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|| |||| |||||||||| ||||| ||||| | || | | ||| ||||| || ||
Sbjct 1167115 CAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 1167056
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||||||| || || || |||| | | || | ||||||| || || ||
Sbjct 1167055 AATACCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGAC 1166996
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | || |||| |||||| || |||||||| || || || ||||||
Sbjct 1166995 CTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCATA 1166947
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | | ||| |||||||| || || || ||||||||||||||||| || |
Sbjct 1167403 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 1167344
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| |||||||||||||||| ||||| | || | | ||||||||| || ||
Sbjct 1167343 AATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGA 1167284
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||| ||||| || || || |||| | | || | ||||||| || || ||
Sbjct 1167283 ATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACC 1167224
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | || || | || || || | |||||| || || || ||||||
Sbjct 1167223 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCATA 1167176
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
|| || || || || | |||||||| || || || ||||| ||||| ||||| || | |
Sbjct 1165250 CCACCACGTAAACGGAGAACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGAT 1165191
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
||| || | |||||||||||||| |||||| | || | | ||| ||||| || ||
Sbjct 1165190 AGAGTTCGGC-CATCTTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 1165132
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| || || ||||| || ||| ||| | | || | ||||||| || |||||
Sbjct 1165131 GATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAAC 1165072
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||| | || || | || ||||||| |||||| ||||| || ||||||
Sbjct 1165071 TTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCATA 1165023
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| ||||| || |||||||||||| || | || |||| ||||| || || ||
Sbjct 1168057 GTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGCTTGCCA 1167998
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| |||| || | |||||||| || || | |||||||| || || || |||
Sbjct 1167997 GCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTTTT 1167938
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | || || || || || || |||| ||| || || |||||
Sbjct 1167937 ACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGTGATAGTTTTCCCAGTGAGAGTC 1167878
Query 27231 TTCACAAAGATTTGCATA 27248
|| ||||| || ||||||
Sbjct 1167877 TTGACAAATATCTGCATA 1167860
>seq1104
Length=1074228
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117
|||| ||||| ||||| ||| | ||||| | || || |||||||| || ||| | |
Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975
Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177
|||| ||||||||||| || || | ||||| || || ||||||| || | | |
Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915
Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237
| | ||||| | ||| || || || || || || | || ||||| || ||||||||||
Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855
Query 27238 AGATTTGCATA 27248
|||| ||||||
Sbjct 390854 AGATCTGCATA 390844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424574410316232
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