Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5117 150 1e-31 seq52431 140 2e-28 seq68007 122 5e-23 seq1104 96.9 2e-15 seq5959 89.7 3e-13 >seq5117 Length=2329582 Score = 150 bits (166), Expect = 1e-31 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| | ||| |||||||| |||||| |||||||||||||||||||| || Sbjct 1167859 CCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGAC 1167800 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||| |||||||| || ||||| || || | |||||| || || || Sbjct 1167799 AGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 1167740 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| |||||||| ||| ||| | ||| || | || |||||| ||| ||| | Sbjct 1167739 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGC-CTCAA 1167682 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || || ||||| |||||||||||||| Sbjct 1167681 CTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 122 bits (134), Expect = 5e-23 Identities = 146/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| ||||| ||||||||||| || || || ||||||||||||| || || ||||| Sbjct 1167595 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1167536 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||| || ||||| || | ||| || ||||| ||| ||| | |||||| | Sbjct 1167535 ATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTC-CTGAATTTTAGCTTTAACATT 1167477 Query 34636 -AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || |||||| ||| || ||||||| || ||||||||||| || | ||||| | Sbjct 1167476 CTCGATCGTGTCTGATGCT-TCGACTTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGA 1167418 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 1167417 CAAAAATCTGCAT 1167405 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| |||||||| | ||| || |||||||| || ||||| || Sbjct 1167403 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 1167344 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || ||||||| || ||||| |||||||| || || | |||||| || || || Sbjct 1167343 AATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGA 1167284 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || ||| | ||||||||| ||| || Sbjct 1167283 ATACCTTCTTTGTCT-TGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGAC 1167225 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || ||||| ||||| || ||||||||||| Sbjct 1167224 CTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 100 bits (110), Expect = 2e-16 Identities = 162/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTT-TTGAATGTTATAATCTGA 34538 || || | ||| | ||| || ||||| | || ||||| |||||| || ||||| || Sbjct 1167175 CCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAATCAGA 1167116 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || ||||||| |||||||| |||||||| || || | ||| || || || || Sbjct 1167115 CAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 1167056 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | ||||| |||||| ||| ||| | || ||| | ||||||||| ||| | Sbjct 1167055 AATACCCTCTTTGTCT-TGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGA 1166997 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| || || | ||||| || ||||||||||| Sbjct 1166996 CCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || || || |||||||| ||||| || || ||||| | ||||| Sbjct 1165232 ACCAAATGCAATGTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCG 1165173 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| ||||| || || || | ||| || || || || | ||| ||||| || || Sbjct 1165172 AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCC-TG 1165114 Query 34618 ATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCACTTCCACGGTTATCGTTT 34675 | ||| | ||| || | || |||||| ||| ||| ||||||| || || || | Sbjct 1165113 AATTTTGGCTTTGACATTCTCGATCGTGTCTGACGC-CTCAACTTCCAATGTGATGGTCT 1165055 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| |||||||||||||| Sbjct 1165054 TTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1165024 Score = 91.5 bits (100), Expect = 9e-14 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || ||||| || || || || || || | || || |||||||| Sbjct 1164776 ACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCCGTCTTCA 1164717 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || ||||| || ||||| || || | || |||||||| Sbjct 1164716 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGA 1164657 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||| |||| || | ||| ||||| ||| || || | |||||| || || Sbjct 1164656 ATCTTTGCCTTTA-CGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTATGGTCTT 1164598 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| ||||| || ||||||||||||||| || Sbjct 1164597 TCCGGTCAACGTCTTTACAAAAATCTGCATGGTG 1164564 Score = 91.5 bits (100), Expect = 9e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| ||||| ||||||||||| || || || ||||||||||||| || || ||||| Sbjct 1164986 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1164927 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||||| ||||| || | || || ||||| ||| ||| | ||| ||| | Sbjct 1164926 ATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTC-CTGAATTTTCGCTTTGACGTT 1164868 Query 34636 -AAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || |||| | ||| || || |||| || || || || || || || ||||| | Sbjct 1164867 CTCGATCGTGTCCGAAGCT-TCTACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAA 1164809 Query 34694 CAAAAATCTGCAT 34706 | || |||||||| Sbjct 1164808 CGAAGATCTGCAT 1164796 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| |||||||| | ||| || || |||||||||||||| || Sbjct 1166946 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAT 1166887 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | |||||||||||||| |||||||| || || | ||| || || || || Sbjct 1166886 AATGTGCGACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGA 1166827 Query 34600 ACTCCCTC 34607 | ||||| Sbjct 1166826 ATACCCTC 1166819 >seq52431 Length=384 Score = 140 bits (154), Expect = 2e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||||| |||| ||| || ||| |||||||||||||| || || ||| Sbjct 304 CCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAA 245 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || |||||||||||||| ||||| || | |||||| || || || || Sbjct 244 AGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGA 185 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | |||||| |||||| ||| ||| | || || | ||||||||| ||| || | Sbjct 184 ATTCCCTCTTTGTCTTGGAT-TTTGGCCTTCACATTTTCTATTGTGTCTGAAGCT-TCAA 127 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || |||||||| || | || ||||| || ||||||||| Sbjct 126 CTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCATG 77 >seq68007 Length=840 Score = 122 bits (134), Expect = 5e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| |||| |||| ||| || || ||||||||||||||||| || ||| Sbjct 239 CCTCCTCGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAA 180 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || |||||||| || ||||| || ||||| ||||| || || || Sbjct 179 AGAGTTCTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGA 120 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | |||||| ||||| ||| ||| | || || | ||||||||| ||| || | Sbjct 119 ATTCCCTCTTTGTCCTGGAT-TTTGGCCTTCACATTTTCTATTGTGTCTGAAGCT-TCAA 62 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || |||||||| || | ||||| || || ||||||||| Sbjct 61 CTTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCATG 12 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || || || || ||||| || |||||||| ||||| ||||| ||| Sbjct 467 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAA 408 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | ||||||| || ||||| || || || |||||||||||||| || || || Sbjct 407 AGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGG 348 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCCA 34657 | ||| || || ||| || ||| | ||| ||| | || || | | ||| || | Sbjct 347 ATTCCTTCTTTATCT-TGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCT-TCAA 290 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| ||||| | || ||||||||||| ||||| Sbjct 289 CTTCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCAT 241 >seq1104 Length=1074228 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||| ||||| ||||| || ||| | || || || ||||| || || || Sbjct 391035 CCTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAG 390976 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||||| || || || | |||||||||||| |||| || | ||||| | Sbjct 390975 ATGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATC-TTGGCCTTAACATT 390917 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| | ||| || || | ||| || || ||||| || | |||||||| Sbjct 390916 CTCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCAC 390857 Query 34695 AAAAATCTGCAT 34706 ||| |||||||| Sbjct 390856 AAAGATCTGCAT 390845 >seq5959 Length=1871824 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 34522 TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAA 34581 |||||||| || || ||||| |||| | || |||||||||||||| ||||| || | | Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 34582 CGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAAT 34640 ||||| || || || || | |||||| ||||| ||| ||| | || || | || Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGAT-TTTGGCCTTCACATTTTCTAT 1420569 Query 34641 TGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAA 34699 ||||||| ||| || ||||| | || || ||||| || || | || |||||||| | Sbjct 1420570 TGTGTCTGAAGCT-TCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGA 1420628 Query 34700 TCTGCAT 34706 | ||||| Sbjct 1420629 TTTGCAT 1420635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314462972000063