Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq68007 163 2e-35 seq5117 154 1e-32 seq52431 132 4e-26 seq5959 120 3e-22 seq1104 116 3e-21 >seq68007 Length=840 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| |||||||| | ||||| |||||||| ||| | || Sbjct 241 ATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTCG 300 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 301 GATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCAA 360 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | ||| || ||||| | |||||| || ||| |||||||||||||| Sbjct 361 CAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAAC 420 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGG-GGTG 27213 || |||||||| || || | || || ||||| || || |||| |||| Sbjct 421 ATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGGTG 469 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||||||||| || || || | || || |||||||| ||| | || Sbjct 12 CATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTC 71 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||||| || |||||||| || || || || ||||| Sbjct 72 AGACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCA 131 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | || ||||||||| |||| || | || ||||||| || || Sbjct 132 ACAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAA 191 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 |||||||||||| || || | ||| ||||| |||| Sbjct 192 CATTCAAAAGGAATCAACACTTCATCTGGTTCTGCG 227 >seq5117 Length=2329582 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| | |||||| | || || ||| | || Sbjct 1164796 ATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTCG 1164855 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| |||||| |||||||| |||||||||||||| || || |||||| Sbjct 1164856 GACACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAA 1164915 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || || ||| | |||||| | || | || ||||| || Sbjct 1164916 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1164975 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| |||||||| || |||||| | |||||||| ||||| || Sbjct 1164976 ATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGGTAT 1165025 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | || || | ||||| || |||| Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| |||||| |||||||| ||||| ||||| || || || |||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | |||||| || || | || ||||| ||| Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTCTGATTATAAC 1167812 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||||||||| || || | |||||||||||| Sbjct 1167813 ATTCAAAAGGAATCCACTCTGCATTTGGTTTTG 1167845 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || || | || ||||| ||||| ||| | || Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || ||| |||||||| ||||||||||| || || || ||||| Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || ||| | |||||| | || | || ||||| || Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| |||||||| || |||||| | |||||||| ||||| || Sbjct 1167585 ATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGGTAT 1167634 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | || || | ||||| || |||| Sbjct 1165024 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1165083 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| |||||| |||||||| || || ||||| || || || ||||| Sbjct 1165084 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAG 1165143 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||| ||||| | ||||| | || | || ||||||||| Sbjct 1165144 CAGAGGTTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGAACTCTATCTGATTACAAC 1165203 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || || ||||||||| | ||||| || ||||| || Sbjct 1165204 ATTCAGAAAGAATCAACATTGCATTTGGTTCTCCGTTTACGTGGTGGTAT 1165253 Score = 134 bits (148), Expect = 1e-26 Identities = 169/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || ||||| |||| || | || || || | || Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||||||||||||||||| || || || |||||||| Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAG 1167067 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| |||||| | |||||| | || | || |||||||| Sbjct 1167068 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAAT 1167127 Query 27168 ATTCAA-AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || |||||||| |||||| | | || ||||| || Sbjct 1167128 ATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAGACTTCGCGGTGGTAT 1167178 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| | || || ||| | || || | || || || | || Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || |||||||||||||||||||| || || ||||||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| ||||| | |||||| | || | || |||||||| Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAAT 1167356 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || || |||||||||||| | | || ||||| || Sbjct 1167357 ATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGGTAT 1167406 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || ||||| || || || |||| || || || || || | || Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || ||| |||||||||||||||||| ||||| || ||||||||| Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || | | || | ||| ||||| ||| | || ||| | ||| | || ||||| ||||| Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGAC-GGACGAACTTTGTCCGACTACAA 1168039 Query 27167 CATTCAAAAGGAGTCGAC 27184 || || || || || || Sbjct 1168040 TATCCAGAAAGAATCTAC 1168057 >seq52431 Length=384 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||| || || || | || || |||||||| ||| | || Sbjct 77 CATGCAGATCTTCGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTC 136 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||||| ||||||||||| || || || || ||||| Sbjct 137 AGACACAATAGAAAATGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCA 196 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || |||||| | || || || || ||||||| ||||| Sbjct 197 GCAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAA 256 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | ||| ||||||||||| | || || || || Sbjct 257 CATTCAAAAGGAATCCACACTTCATCTGGTTTTGCGTCTTCGAGGAGGAAT 307 >seq5959 Length=1871824 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| || || || || | || |||||||| |||||| | || Sbjct 1420864 CATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTC 1420805 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| |||||| || || |||||||||||||| || || || ||||| Sbjct 1420804 TGATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCA 1420745 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || || || ||| ||||||| | || | ||||| ||||| Sbjct 1420744 GCAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAA 1420685 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| | ||| | ||| | || || || || Sbjct 1420684 CATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGAAT 1420634 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || ||||| | |||||||||||||| ||| | || Sbjct 1420635 ATGCAAATCTTTGTGAAGACTCTTACTGGCAAAACCATTACTCTTGAAGTTGAAGCTTCA 1420576 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || |||||||| || || || || ||||| Sbjct 1420575 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCAG 1420516 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || |||||| | || || || || ||||||| |||||| Sbjct 1420515 CAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAAC 1420456 Query 27168 ATTCA 27172 ||||| Sbjct 1420455 ATTCA 1420451 >seq1104 Length=1074228 Score = 116 bits (128), Expect = 3e-21 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | ||||| ||||| || || | ||| Sbjct 390845 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCC 390904 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || ||||| || || || ||||| |||||| Sbjct 390905 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAA 390964 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| |||||||| |||| || | || |||||||||||||| Sbjct 390965 CAGCGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAAC 391024 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 391025 ATTCAGAAAGG 391035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434540504838720