Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq68007 163 2e-35
seq5117 154 1e-32
seq52431 132 4e-26
seq5959 120 3e-22
seq1104 116 3e-21
>seq68007
Length=840
Score = 163 bits (180), Expect = 2e-35
Identities = 175/229 (76%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| |||||||| | ||||| |||||||| ||| | ||
Sbjct 241 ATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTCG 300
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||| ||||| |||||||| || ||||| ||||||
Sbjct 301 GATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCAA 360
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||||||||| | ||| || ||||| | |||||| || ||| ||||||||||||||
Sbjct 361 CAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAAC 420
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGG-GGTG 27213
|| |||||||| || || | || || ||||| || || |||| ||||
Sbjct 421 ATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGGTG 469
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || ||||||||||| || || || | || || |||||||| ||| | ||
Sbjct 12 CATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTC 71
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | || || ||||| || |||||||| || || || || |||||
Sbjct 72 AGACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCA 131
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| ||||| || | || ||||||||| |||| || | || ||||||| || ||
Sbjct 132 ACAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAA 191
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202
|||||||||||| || || | ||| ||||| ||||
Sbjct 192 CATTCAAAAGGAATCAACACTTCATCTGGTTCTGCG 227
>seq5117
Length=2329582
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| |||| || ||| | |||||| | || || ||| | ||
Sbjct 1164796 ATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTCG 1164855
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| |||||| |||||||| |||||||||||||| || || ||||||
Sbjct 1164856 GACACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAA 1164915
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | || || | || || || ||| | |||||| | || | || ||||| ||
Sbjct 1164916 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1164975
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||| |||||||| || |||||| | |||||||| ||||| ||
Sbjct 1164976 ATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGGTAT 1165025
Score = 150 bits (166), Expect = 2e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || ||| | || || | ||||| || ||||
Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| |||||| |||||||| ||||| ||||| || || || ||||||
Sbjct 1167693 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 1167752
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || || |||||| | |||||| || || | || ||||| |||
Sbjct 1167753 CAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTCTGATTATAAC 1167812
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200
||||||||||| || || | ||||||||||||
Sbjct 1167813 ATTCAAAAGGAATCCACTCTGCATTTGGTTTTG 1167845
Score = 149 bits (164), Expect = 5e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || || || || | || ||||| ||||| ||| | ||
Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| || ||| |||||||| ||||||||||| || || || |||||
Sbjct 1167465 GACACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAG 1167524
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || || || ||| | |||||| | || | || ||||| ||
Sbjct 1167525 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAAT 1167584
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||| |||||||| || |||||| | |||||||| ||||| ||
Sbjct 1167585 ATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGGTAT 1167634
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || ||| | || || | ||||| || ||||
Sbjct 1165024 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1165083
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| |||||| |||||||| || || ||||| || || || |||||
Sbjct 1165084 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAG 1165143
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | |||||| ||||| | ||||| | || | || |||||||||
Sbjct 1165144 CAGAGGTTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGAACTCTATCTGATTACAAC 1165203
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| || || || || || ||||||||| | ||||| || ||||| ||
Sbjct 1165204 ATTCAGAAAGAATCAACATTGCATTTGGTTCTCCGTTTACGTGGTGGTAT 1165253
Score = 134 bits (148), Expect = 1e-26
Identities = 169/231 (73%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || |||||||| || ||||| |||| || | || || || | ||
Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || ||||||||||||||||| || || || ||||||||
Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAG 1167067
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||| |||||| | |||||| | || | || ||||||||
Sbjct 1167068 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAAT 1167127
Query 27168 ATTCAA-AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| ||||| || || |||||||| |||||| | | || ||||| ||
Sbjct 1167128 ATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAGACTTCGCGGTGGTAT 1167178
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || |||||| | || || ||| | || || | || || || | ||
Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || |||||||||||||||||||| || || |||||||||
Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||| ||||| | |||||| | || | || ||||||||
Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAAT 1167356
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| || || || || |||||||||||| | | || ||||| ||
Sbjct 1167357 ATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGGTAT 1167406
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| || ||||| || || || |||| || || || || || | ||
Sbjct 1167861 ATGCAGATATTTGTCAAGACTCTCACTGGGAAAACTATCACACTGGAGGTCGAGGCTTCG 1167920
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| || ||| |||||||||||||||||| ||||| || |||||||||
Sbjct 1167921 GACACGATCGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAA 1167980
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
|| | | || | ||| ||||| ||| | || ||| | ||| | || ||||| |||||
Sbjct 1167981 CAAAGACTGATTTTCGCTGGCAAGCAACTCGAGGAC-GGACGAACTTTGTCCGACTACAA 1168039
Query 27167 CATTCAAAAGGAGTCGAC 27184
|| || || || || ||
Sbjct 1168040 TATCCAGAAAGAATCTAC 1168057
>seq52431
Length=384
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||||| || || || | || || |||||||| ||| | ||
Sbjct 77 CATGCAGATCTTCGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTC 136
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | || || ||||| ||||||||||| || || || || |||||
Sbjct 137 AGACACAATAGAAAATGTGAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCAGATCA 196
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | || || |||||| | || || || || ||||||| |||||
Sbjct 197 GCAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAA 256
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||||||| || || | ||| ||||||||||| | || || || ||
Sbjct 257 CATTCAAAAGGAATCCACACTTCATCTGGTTTTGCGTCTTCGAGGAGGAAT 307
>seq5959
Length=1871824
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || ||||| ||||| || || || || | || |||||||| |||||| | ||
Sbjct 1420864 CATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTC 1420805
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | || |||| |||||| || || |||||||||||||| || || || |||||
Sbjct 1420804 TGATACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCA 1420745
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| ||| | || | || || || ||| ||||||| | || | ||||| |||||
Sbjct 1420744 GCAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAA 1420685
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| || | ||| | ||| | ||| | || || || ||
Sbjct 1420684 CATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGAAT 1420634
Score = 109 bits (120), Expect = 5e-19
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| || ||||| | |||||||||||||| ||| | ||
Sbjct 1420635 ATGCAAATCTTTGTGAAGACTCTTACTGGCAAAACCATTACTCTTGAAGTTGAAGCTTCA 1420576
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || ||||| || |||||||| || || || || |||||
Sbjct 1420575 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCAG 1420516
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || || |||||| | || || || || ||||||| ||||||
Sbjct 1420515 CAGCGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAAC 1420456
Query 27168 ATTCA 27172
|||||
Sbjct 1420455 ATTCA 1420451
>seq1104
Length=1074228
Score = 116 bits (128), Expect = 3e-21
Identities = 141/191 (74%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || || || ||| | ||||| ||||| || || | |||
Sbjct 390845 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCC 390904
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || || || || ||||| || || || ||||| ||||||
Sbjct 390905 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAA 390964
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| |||||||| |||| || | || ||||||||||||||
Sbjct 390965 CAGCGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAAC 391024
Query 27168 ATTCA-AAAGG 27177
||||| |||||
Sbjct 391025 ATTCAGAAAGG 391035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434540504838720
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