Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5117 100 2e-16 >seq5117 Length=2329582 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || || | || || |||||||||||||| | || Sbjct 1167270 GACAAAGAAGGTATTCCTCCCGATCAACAGAGATTGATCTTTGCCGGAAAACAGCTCGAA 1167329 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||| |||||||| || |||||||| ||| ||||||||||||||| Sbjct 1167330 GACGGACGCACATTGTCTGATTACAATATTCAAAAAGAATCCACATTGCATTTGGTTTTG 1167389 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 11/219 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||| ||||| ||| ||| ||| | || ||||| | Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || || ||||| |||||||| ||| |||| | Sbjct 1167008 GAC-----ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCG 1167062 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| | || || ||||||||||||||| | || |||| ||||| ||||| |||| Sbjct 1167063 ATCAGCAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATT 1167122 Query 27965 ACAACATCCAAAAAGAGAGC-ACTTTGCATTTGGTTTTG 28002 |||| || ||| ||| | | || || ||||| |||||| Sbjct 1167123 ACAATATTCAAGAAGGAATCTACGTTACATTTAGTTTTG 1167161 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| |||||||| ||||| |||||||| ||| || || | || |||||| | || Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| || ||| ||||| ||||||||||| | || ||| | Sbjct 1167465 GACACGATCGAGAAT--GTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATC 1167522 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| ||| | || |||| || | | || ||||| | Sbjct 1167523 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATA 1167582 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || || || ||||| |||||| | |||||||| || || Sbjct 1167583 ATATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1167631 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||| | || || || || ||| | || || || | Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| |||||| ||||| ||||| ||||| |||| || | Sbjct 1167693 GACACGATCGAGAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATC 1167750 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || || ||||| ||||||||| | || |||| |||| |||| ||||| | Sbjct 1167751 AACAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTCTGATTATA 1167810 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || |||| |||||||||||||| | | |||||||| Sbjct 1167811 ACATTCAAAAGGAATCCACTCTGCATTTGGTTTTGAGGCTTCGTGGCGG 1167859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355560925718697