Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5959 159 8e-34 seq68007 158 3e-33 seq5117 150 4e-31 seq1104 149 1e-30 seq52431 138 3e-27 seq514 93.3 1e-13 >seq5959 Length=1871824 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||| || || ||||| || ||||| || |||||||| || || | || || Sbjct 1420643 CGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTT 1420702 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| ||||| || || ||||| || ||||| || || ||||| | ||| Sbjct 1420703 CTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGGATACCT 1420762 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||| || || || || || ||||| ||| ||||| ||| Sbjct 1420763 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCAAGA 1420822 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || ||||| | ||||| Sbjct 1420823 GTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 210930 TGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGG 210989 || ||||| || || | ||| || || ||||| || || || || || || || || || Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGA 1420510 Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || || || ||||||| ||| || ||||||||||| || ||||| ||||| || Sbjct 1420511 CGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATT 1420570 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 ||||| || |||||| || ||||| || || || || || |||||||| ||||| | Sbjct 1420571 GTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGATT 1420630 Query 211110 TGCATT 211115 |||||| Sbjct 1420631 TGCATT 1420636 >seq68007 Length=840 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | ||| || || || || ||||||||||| ||||| | ||| ||| Sbjct 461 CGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTC 402 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||| ||||| || ||||||||||| | || ||||| ||||| || | |||| Sbjct 401 CTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCT 342 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || || || ||| |||||||| ||||| || || |||||| || || Sbjct 341 TCTTTATCTTGTATTTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAGG 282 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || ||||||||||| ||||| | |||||| Sbjct 281 GTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCATT 240 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || ||||| || || || ||||| |||||||| || | ||| || Sbjct 233 CGAAGGCGCAGAACCAGATGAAGTGTTGATTCCTTTTGAATGTTATAGTCGGAAAGAGTT 174 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||| ||||| || ||||| || || || | |||||||| || || |||| ||| Sbjct 173 CTGCCATCCTCCAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGAATTCCC 114 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| || ||||| ||||| || ||||| || |||||| || || Sbjct 113 TCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGG 54 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| ||||| ||||| || | |||||| Sbjct 53 GTGATGGTTTTACCCGTAAGAGTTTTTACGAAGATCTGCAT 13 >seq5117 Length=2329582 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| || || || || ||||| || || || | | ||| | ||| Sbjct 1164783 TCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCC 1164724 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| |||||||| || |||||||| | ||||| |||||||| || | |||||||| Sbjct 1164723 GTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTT 1164664 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| |||||| || ||||| || || ||||| || || |||||||| || || Sbjct 1164663 GTCCTGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTAT 1164604 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || | ||||||||||| | |||||| Sbjct 1164603 GGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || ||||||||||| || || ||||| ||||| || || || | | || | Sbjct 1168079 AAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGGATATTGTAGTCGGACAAAGTTCG 1168020 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| || || || |||||||| ||||| || || | |||||| || ||||||| || || Sbjct 1168019 TCCGTCCTCGAGTTGCTTGCCAGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCCTC 1167960 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || || ||| ||| || || ||||| ||||| || || ||||| || || Sbjct 1167959 TTTGTCTTGAATTTTTGCTTTTACATTCTCGATCGTGTCCGAAGCCTCGACCTCCAGTGT 1167900 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || ||||||||||| ||||| | |||||| Sbjct 1167899 GATAGTTTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 1167861 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| || | || | || |||||||| || ||||| ||||||||||| | || || Sbjct 1167854 ACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGT 1167795 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| || || || || || ||||| | | ||||| || ||||||| ||| Sbjct 1167794 GCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCC 1167735 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| || || ||| || || ||||| ||||| || ||||| || | Sbjct 1167734 TTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCAA 1167675 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| | ||| || ||||| | |||||| Sbjct 1167674 TGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || ||||| || ||||| ||||| | || || | |||||||| ||||| || || Sbjct 1165220 GTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCGAGCTGTTTTCCG 1165161 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || || || ||||| | ||||||||| ||||| || || ||| Sbjct 1165160 GCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTG 1165101 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| ||||| || ||||| || | ||||| ||||||||||| | ||| Sbjct 1165100 ACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTCCCGTCAAAGTT 1165041 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 1165040 TTGACAAAAATCTGCAT 1165024 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || || || |||||||| | || || | || ||||| || ||||| || Sbjct 1164992 GTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCA 1164933 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | | |||||| || ||||| | ||||| |||||||| || || ||| Sbjct 1164932 GCAAAGATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTCGCTTTG 1164873 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||| ||||| || ||| ||||| | ||| || ||||||||||| | || Sbjct 1164872 ACGTTCTCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTT 1164813 Query 211098 TTTACAAACACCTGCATT 211115 || || || | ||||||| Sbjct 1164812 TTAACGAAGATCTGCATT 1164795 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || || || |||||||| | || || | || ||||| || ||||| || Sbjct 1167601 GTCGATTCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCA 1167542 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | | || || || ||||| | |||||| |||||||| || || ||| Sbjct 1167541 GCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTA 1167482 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| ||||| || ||| || || ||||||||||| || || || || || Sbjct 1167481 ACATTCTCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTAAGTGTT 1167422 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 1167421 TTGACAAAAATCTGCAT 1167405 >seq1104 Length=1074228 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || ||||| ||||| | ||| || | ||||| |||||||| ||||| ||||||| Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || ||||| || || || | ||| ||||||||||||||||| || || || | Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||||||||| ||| || ||||| || || || ||||| |||||||| || || |||| Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACAA 390855 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 390854 AGATCTGCAT 390845 >seq52431 Length=384 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||| ||||| || ||||| ||||| || || | ||| || || ||||| || Sbjct 286 ACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTTCTACCATCCTCA 227 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || || || || || || || || || || || || ||||||| ||| || ||||| ||| Sbjct 226 AGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGG 167 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||||| ||||| || ||||| || |||||| || || ||||| || || Sbjct 166 ATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGGGTGATGGTTTTA 107 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| || || | |||||| Sbjct 106 CCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq514 Length=2723796 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| |||||||| || || ||||| |||||||| || ||||| |||||||| Sbjct 26980 CCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATTGTATCAGACGCCTCAACCTCA 27039 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||||||||| ||||| |||||||| | |||||| Sbjct 27040 AGGGTGATGGTCTTTCCCGTAAGAGTTTTTACAAAGATCTGCAT 27083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158119647999515