Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5117 140 2e-28 seq68007 136 3e-27 seq5959 136 3e-27 seq1104 104 2e-17 >seq5117 Length=2329582 Score = 140 bits (154), Expect = 2e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | || ||||| || ||||| | || || || | | Sbjct 1167177 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCA 1167236 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || |||||| |||||||||||| | || || |||||| Sbjct 1167237 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAA 1167296 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||| ||||| || ||||||| |||||| || |||||||| Sbjct 1167297 CAGAGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAAT 1167356 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || |||||||| |||||||| ||||| ||||| || Sbjct 1167357 ATTCAAAAAGAATCCACATTGCATTTGGTTTTGAG 1167391 Score = 134 bits (148), Expect = 9e-27 Identities = 160/216 (74%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| ||||| || ||||| ||||| | || || || | | Sbjct 1166948 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCA 1167007 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || |||||| |||||||| ||| | || || ||||| Sbjct 1167008 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAG 1167067 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||| |||||||| ||||||| |||||| || |||||||| Sbjct 1167068 CAGAGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAAT 1167127 Query 23791 ATACAA-AAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||| || || || || |||||||||||||| || Sbjct 1167128 ATTCAAGAAGGAATCTACGTTACATTTAGTTTTGAG 1167163 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | |||||||| || ||||| | |||||||| | | Sbjct 1167633 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1167692 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||||| ||||| ||||| | || |||||||| Sbjct 1167693 GACACGATCGAGAATGTCAAAGC-CAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCA 1167751 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || |||||||| ||||||| ||||| | ||||| || Sbjct 1167752 ACAGAGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTCTGATTATAA 1167811 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||| | ||||| ||||| ||| | || || || Sbjct 1167812 CATTCAAAAGGAATCCACTCTGCATTTGGTTTTGAGGCTTCGTGGCGG 1167859 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || || |||||||||||||| ||||| || | | Sbjct 1167405 ATGCAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 1167464 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | |||||| ||||||||||| | || || ||||| Sbjct 1167465 GACACGATCGAGAATGTTAAAGC-TAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCA 1167523 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||||| || ||| | ||||| || Sbjct 1167524 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1167583 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || || || || ||| | | |||||||| || Sbjct 1167584 TATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1167631 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | |||||||| || ||||| | |||||||| | | Sbjct 1165024 ATGCAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCA 1165083 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||||| || || ||||| | || |||||||| Sbjct 1165084 GACACGATCGAGAATGTCAAAGC-CAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCA 1165142 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| ||||| || ||||| | || ||| || |||||||| Sbjct 1165143 GCAGAGGTTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGAACTCTATCTGATTACAA 1165202 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||| || ||||| ||||| ||| Sbjct 1165203 CATTCAGAAAGAATCAACATTGCATTTGGTT 1165233 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| |||||||||||| | |||||||| || || ||| | || || || | | Sbjct 1164795 AATGCAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTC 1164854 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | ||| |||||| ||||||||||| | || || ||||| Sbjct 1164855 GGACACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCA 1164914 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||||| || ||| | ||||| || Sbjct 1164915 ACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAA 1164974 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || || || || ||| | | |||||||| || Sbjct 1164975 TATTCAGAAGGAATCGACCTTGCACTTGGTTCTCCGTTTGCGAGGTGG 1165022 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || || || ||||| || || | | Sbjct 1164568 ATGCAGATTTTTGTAAAGACGTTGACCGGAAAGACCATAACCCTCGAGGTCGAGGCTTCC 1164627 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | |||| ||| ||| ||||| ||||| | || || || || Sbjct 1164628 GACACTATTGAGAACGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCTGACCAG 1164687 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || || || || ||||||| |||||| || || ||||| Sbjct 1164688 CAACGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGCACCTTGTCTGACTACAAT 1164747 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || || || | || || ||| | || ||||| || ||| Sbjct 1164748 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGATTGCGCGGCGGA 1164795 >seq68007 Length=840 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || ||||| || ||||| || || || |||||||| | | Sbjct 240 AATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTC 299 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| ||||| ||||| || |||||||| | || || ||||| Sbjct 300 GGATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCA 359 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||||||| || || || ||||| || ||||||| | ||| | ||||||||| Sbjct 360 ACAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAA 419 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || ||| | || ||||||||| | | || ||||| Sbjct 420 CATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 467 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || ||||| ||||| ||||| || |||||||| | | Sbjct 13 ATGCAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCA 72 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| |||||||| || | || ||||||||| Sbjct 73 GACACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 132 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| |||||||||||||| || | | ||| | ||| || ||| Sbjct 133 CAACGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAAC 192 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || ||| | ||| | ||| | | | ||||||||| Sbjct 193 ATTCAAAAGGAATCAACACTTCATCTGGTTCTGCGCCTTCGAGGAGGA 240 >seq5959 Length=1871824 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| |||||||| |||||||| || || || | | Sbjct 1420863 ATGCAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCT 1420804 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | ||| | || | | |||||||||||| | || |||||||| Sbjct 1420803 GATACTATAGAGAATGTCAAAGCTAAGA-TCCAAGACAAAGAAGGTATCCCTCCAGATCA 1420745 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| || || ||||||||||| | | | ||| | ||| ||||| Sbjct 1420744 GCAACGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAA 1420685 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| ||| | ||| ||||| || | | ||||||||| Sbjct 1420684 CATCCAGAAGGAGTCTACACTTCATCTAGTTCTACGTCTTCGAGGAGGA 1420636 >seq1104 Length=1074228 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||||||||| || || || || || || || || || | Sbjct 390845 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCC 390904 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | | ||||| || || | || |||||||| Sbjct 390905 GACACCATCGAGAATGTTAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCACCAGATCA 390963 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || |||||||| ||||| || | |||||| | ||||||||| Sbjct 390964 ACAGCGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAA 391023 Query 23790 CATACAAAAAG 23800 ||| || |||| Sbjct 391024 CATTCAGAAAG 391034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337723249991588