Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5117 150 4e-31 seq6734 132 1e-25 seq52431 129 1e-24 seq68007 125 2e-23 seq5959 123 6e-23 seq1104 118 3e-21 seq69511 91.5 4e-13 seq5493 91.5 4e-13 seq514 91.5 4e-13 >seq5117 Length=2329582 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || | || | |||||||||||||| | ||||||||| | ||| || Sbjct 1167397 CGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTG 1167338 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| ||||| || || || ||||| | || ||||| ||||| ||||||||| Sbjct 1167337 CGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGGAGGAATACCT 1167278 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| || || |||||| ||||| |||||||| | || || || || Sbjct 1167277 TCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCTGAAGCCTCGACCTCCAAT 1167218 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || |||||||| | ||| | ||||| Sbjct 1167217 GTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 134 bits (148), Expect = 3e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| |||| || | || ||||||||||| ||||| | || ||||| | || || Sbjct 1167854 ACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATCAGACAGTGT 1167795 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || ||||| ||||| | || ||||| || || ||||| || Sbjct 1167794 GCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATTCC 1167735 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| || || ||| |||| ||| ||||| |||||||| | || || || | Sbjct 1167734 TTCCTTGTCCTGAAT-TTTGGCTTTGACATTCTCGATCGTGTCTGACGCCTCAACTTCCA 1167676 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 | ||||| ||||| |||||||||||||| Sbjct 1167675 ATGTGATGGTCTTTCCCGTCAAAGTTTT 1167648 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || ||||| || |||| |||||| || | ||| || | || Sbjct 1164783 TCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGTCC 1164724 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| |||||||| ||||||||||| | ||||| ||||| || || || |||||||| Sbjct 1164723 GTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGTGGGATGCCTTCCTT 1164664 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || |||||| ||| || || || ||||| || | || || || | || || Sbjct 1164663 GTCCTGAATCTTTGCCTTTACGTTCTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTTAT 1164604 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || |||| || | ||||| Sbjct 1164603 GGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCAT 1164568 Score = 116 bits (128), Expect = 9e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| || | |||||||| | | ||||| |||||||| ||||| || || Sbjct 1165220 GTTGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGGCCATCTTCGAGCTGTTTTCCG 1165161 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | | || || || || || || |||||||| || || || ||| |||| Sbjct 1165160 GCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 1165102 Query 225637 -ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||||| |||||||| | || || || || ||||| ||||| ||||||||||| Sbjct 1165101 GACATTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTCCCGTCAAAGT 1165042 Query 225696 TTT 225698 ||| Sbjct 1165041 TTT 1165039 >seq6734 Length=2547638 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||| |||||||| || ||||| |||||||| |||||||| |||||||| Sbjct 67546 AAGATTTGACCATCGGTAATAGAAATGACATTGGTAGGGATGTAAGCAGACACATCACCA 67487 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | |||||| || ||||| | ||||||||||| ||||||| ||| Sbjct 67486 GCTTGTGTTTCAATAACAGGCAAAGCTGTCAACGATCCACCACCTAAATTTTCATT 67431 >seq52431 Length=384 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || || || |||||||| ||||| | ||||| |||| | |||| Sbjct 298 CGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTT 239 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || || || || ||||| || || || || || || || || ||||| || Sbjct 238 CTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGATCTGGAGGAATTCCC 179 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||||||||| || ||||||| ||| || |||||||| | ||| || || | Sbjct 178 TCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGG 119 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || ||||| | ||| || | ||| | ||||| Sbjct 118 GTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 78 >seq68007 Length=840 Score = 125 bits (138), Expect = 2e-23 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| | || | |||||| || ||||| ||||||| |||||||||| | ||| Sbjct 461 CGAAGTCGTAAAACTAAGTGGAGTGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTC 402 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||||||||| ||||| |||||||| | || ||||| || || || || ||| Sbjct 401 CTACCGTCTTCTAGCTGTTTCCCTGCGAAGATTAAACGCTGTTGATCAGGTGGGATTCCT 342 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || ||||| || ||| || || || ||| ||||| || || | ||| || || | Sbjct 341 TCTTTATCTTGTAT-TTTGGCTTTTACGTTTTCTATGGTATCCGAAGCTTCAACTTCAAG 283 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || ||||| || | ||| || | || | ||||||| Sbjct 282 GGTAATTGTTTTGCCGGTGAGAGTCTTCACAAAAATTTGCATT 240 >seq5959 Length=1871824 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || || || || || || || |||| ||||| |||| | |||| Sbjct 1420643 CGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTT 1420702 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| || ||||| ||||| ||||| || ||||| || || || || |||||| Sbjct 1420703 CTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGAGGGATACCT 1420762 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||||||||| || ||| || || || || || | |||||| || | Sbjct 1420763 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCAAGA 1420822 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | ||||| | || | |||||| Sbjct 1420823 GTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1420863 >seq1104 Length=1074228 Score = 118 bits (130), Expect = 3e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | |||||||||| | ||| | |||||| || ||||| || |||||||||| Sbjct 391034 CTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAGA 390975 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || || ||||| || || || || || |||||||| |||||||| ||| ||| | Sbjct 390974 TGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCT 390915 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||||| |||| || || || | || || ||||| ||||| | ||||| Sbjct 390914 CGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTT 390860 >seq69511 Length=15549 Score = 91.5 bits (100), Expect = 4e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||||||||||||||| || || || ||||| ||||| ||||| Sbjct 720 TTCTGGATGTCCAAAAAATCAGAATAAATGTTGGTATAGAATGGGATCTCCTCCTCCTGA 661 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||||| || ||| || || ||||| | ||||||| Sbjct 660 GGGATCGAAGAAGGAGGTGTTTAAATTACGGTCAGTTA 623 >seq5493 Length=22391 Score = 91.5 bits (100), Expect = 4e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||||||||||||||| || || || ||||| ||||| ||||| Sbjct 7661 TTCTGGATGTCCAAAAAATCAGAATAAATGTTGGTATAGAATGGGATCTCCTCCTCCTGA 7602 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||||| || ||| || || ||||| | ||||||| Sbjct 7601 GGGATCGAAGAAGGAGGTGTTTAAATTACGGTCAGTTA 7564 >seq514 Length=2723796 Score = 91.5 bits (100), Expect = 4e-13 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||||||||| || ||||||||||| ||| | ||||| Sbjct 677548 TTCAGGATGACCAAAAAATCAAAATAAATGTTGGTAGAGGATAGGATCCCCT-CTCCTGA 677606 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATT 370758 || | ||||| | | ||||| ||||| Sbjct 677607 AGGGTTAAAAATGAT-GTATTTAAATT 677632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191469120160634