Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5636 93.3 3e-14 >seq5636 Length=11654 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| || || || ||||| | |||||| || || || || || |||| || Sbjct 1111 CATGTCTTTGTATTCGGCGCCAAAATGTCGCCATTGAAAACCATAGACAGGCCCCAAATC 1170 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||||| | || |||||| ||||| ||| | | ||||| || | || Sbjct 1171 ACCCTCTTCTCGGTTGGTGAAGCCGTAAGAGTCCAGAAAAGCCCGCGAACCATTCTCATC 1230 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 27668 ||| || | | ||||| || | | || || || ||||| || ||| ||| ||||| Sbjct 1231 CCAAATGTGAATACCCTTGTCTGTTAATTCCTTAGAATTTGTCGATCCTTTGATAAACCA 1290 Query 27669 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAAA 27725 |||||| ||||| || || || |||||| || ||||| || || || | |||||| Sbjct 1291 CAGCAGTTCCTCAACCACCGCTCGCCAAAATACTCTCTTAGTTGTCAGTAATGGGAAA 1348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369194166317441