Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4102 138 2e-27 seq33144 118 1e-21 seq1369 113 6e-20 seq10489 105 9e-18 seq5686 96.9 5e-15 seq2744 95.1 2e-14 >seq4102 Length=4342353 Score = 138 bits (152), Expect = 2e-27 Identities = 197/275 (72%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 |||| | |||||||| || |||| ||| | || || |||| || || || |||| Sbjct 711680 GAAATTACCTAGACATCTGCTGATTGTTAGTACAAGCGTTGAATAGCGTTGGTGAAGCAT 711621 Query 78430 GCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 | ||||| || |||||| || || |||||| ||||| ||| || || ||||| | Sbjct 711620 GTGTAAAATATCGTTCAGACAAATA-ATTGTACGTTTCTATAACTTTGTCAATGTCGTTT 711562 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | ||||| || || ||||| | |||||||||||| ||||| || ||||| |||| | Sbjct 711561 TCGTGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCAACTATCTTGCCA 711502 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || ||||||| || || | |||| | ||||| ||||||| ||| || || ||| Sbjct 711501 TTGATTTTCAGCAGATAGCTTCTTTCGAGCGTTTTGAAACCAATATAATTATAACTAAAA 711442 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATC 78643 |||| ||||| || ||| |||||| |||| |||| Sbjct 711441 TCTCGATCGTATATTATAGCAGAATCTAGTCTATC 711407 Score = 114 bits (126), Expect = 2e-20 Identities = 218/317 (69%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||||||||| ||| | | ||| || ||| | ||||| ||||||||| |||||| Sbjct 712807 TACCAATAGGTCTGTGTTTTTGATTAGATGCTTTCGTCTCTGGGATAGGATAAAAATTAA 712748 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 ||| || | ||||| ||||| | | ||| | ||| |||| || |||||| | Sbjct 712747 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTTGCCACTGTTTTAAGTTTATCGA 712688 Query 77644 AATCAAATCTTCCA---TCTATA---ACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||| || || ||| || |||||||| || | ||| ||||| |||| ||| | Sbjct 712687 AATCGAAAGTTTTGGTGTCTGTATTGACAAACATATTAACAGCGATAGACGCTAAATTGC 712628 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || || || | ||||| | || || ||||| ||||| || |||| Sbjct 712627 ACACAGCAACTTCCCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTGCATT 712568 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816 |||||||||| | || ||| || || ||| ||| | |||| || || ||||| ||| Sbjct 712567 TGATAGTGCCTAAATGTTGGTGATTTGATTTTCGATTACAATGA-TCTTTGTAAAGCATA 712509 Query 77817 AACGGAGTCCCGGTTTC 77833 | || || || ||||| Sbjct 712508 TAAGGTGTTCCAGTTTC 712492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || ||||| ||||| || || ||| |||||||||||||| | | ||| ||||| Sbjct 713379 AGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGCCTCACGTAGATATTG 713320 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 || || || ||||| | |||||| || || || ||||| || || || || || |||||| Sbjct 713319 CTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGC 713260 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGAT 77283 |||||||| | || | |||||| | || ||| || ||| || |||| | | Sbjct 713259 ATAGGTGCTATTAAAAGTGAATTTCTCACTCC--GTGCTCCGCGATCTTCGCTTTCAATT 713202 Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 | ||||| ||| | ||| | ||| ||| | ||| | ||||||||| || || Sbjct 713201 CATCCCAATTCCATAAATCCGTTGGTTTAACGTTCCACATATCGTATTGGAGGAT 713147 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143 ||||| || | ||| || | |||||||| |||||||||||||| ||| || || | || Sbjct 712083 TTAAGTTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCTAAATAAATAGCAAATGCT 712024 Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA-AACTCTCAA 78202 || |||||||| || ||||||||||| | ||| || | | |||||| |||| |||| Sbjct 712023 CCTGGTCGTTTGTTTCCTCCCTGATCAACATAAACAGCTATTTCATTATACAACT-TCAA 711965 Query 78203 CATTGGAATAATACCGTTAGATGT 78226 | | || | |||||||| ||| Sbjct 711964 AACGGAAACCAAACCGTTAGTTGT 711941 >seq33144 Length=491 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTC 78466 ||||||| ||| || | ||||||||||| || |||||| || || |||||| ||||| Sbjct 491 TTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATA-ATTGTACGTTTC 433 Query 78467 AATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTG 78526 |||||| || ||||| || ||||| || | ||||| | ||| |||||||| || Sbjct 432 TATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTAACATATGTTG 373 Query 78527 AGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 78586 ||| || ||||| |||| ||| ||||| | || || | |||| | |||||||| Sbjct 372 AGGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTTAAA 313 Query 78587 ACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGT 78638 | || ||| | | |||||||| ||||| || |||||||||| |||| Sbjct 312 ATGAATATAATCAAAACCAAAGTCTCGATCGTATATTATAACAGAATCTAGT 261 >seq1369 Length=41173 Score = 113 bits (124), Expect = 6e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGT 78463 || ||||||| ||| || | ||||||||||| || |||||| || || |||||| || Sbjct 40785 GCGTTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATA-ATTGTACGT 40843 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||| |||||| || ||||| || ||||| || | ||||| | ||| |||||||| Sbjct 40844 TTCTATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTAACATATG 40903 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG-TTT 78582 ||||| || ||||| |||| ||| ||||| | || || | |||| | | ||| Sbjct 40904 TTGAGGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTT 40963 Query 78583 TAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGT 78638 ||||| || ||| | | |||||||| ||||| || |||||||||| |||| Sbjct 40964 TAAAATGAATATAATCAAAACCAAAGTCTCGATCGTATATTATAACAGAATCTAGT 41019 >seq10489 Length=69996 Score = 105 bits (116), Expect = 9e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGT 78463 || ||||||| ||| || | | ||||||||| ||| |||||| || || |||||| || Sbjct 56404 GCGTTAAATAGTGTTGGTAAAGGATGCGTAAAATATTGTTCAGATAAATA-ATTGTACGT 56462 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||| ||| || || ||||| || |||||| || | ||||| | |||||||||||| Sbjct 56463 TTCTATAACTTTGTCAATGTCGTTTTCATGAATACCAATAGCTACTCTCATCAACATATG 56522 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||||| || ||| || |||| ||| ||||| | || || | |||| | ||||| Sbjct 56523 TTGAGGCCTCTCACCCATCTTGCCATTGATTTTTAGCAGATAGCTTCTTTCGAGCGTTTT 56582 Query 78584 AAAACCAAAATA 78595 |||| ||| ||| Sbjct 56583 AAAATCAATATA 56594 >seq5686 Length=2262380 Score = 96.9 bits (106), Expect = 5e-15 Identities = 180/265 (68%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||| ||||||| | | | || | ||| || ||||| | ||||||| || ||| Sbjct 1099666 TACCGATAGATCTATGTTTATCACATGACAATTTTGCGTCTGGTAGAGGATAAAAACTAA 1099725 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 ||| || ||||||| | ||| || | ||| | || ||||| |||||| || Sbjct 1099726 GGTCAATCATTTTATCCAAATTATAGGTGACAATTTTTGCTACTTCCTTAAGTTTATAAA 1099785 Query 77644 AATCAAATCTTCCATCTATA------ACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 | ||||| ||| || || || |||||||| | ||| || || || | |||| Sbjct 1099786 AGTCAAAAGTTCTCTCATTAGAATTCACGAACATGTTAACAGCAATTGAAGCCATGTTAC 1099845 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | | || || |||| ||| | | |||||| | || |||||| | | | | || |||| Sbjct 1099846 ACATGGCAACTTCATCAGCACTTGAATATTGAACTACTTCGGTAGAGAAACTGCTGCATT 1099905 Query 77758 TGATAGTGCCCAGATTTTGTTGGTT 77782 | || ||||||||||| || || || Sbjct 1099906 TAATTGTGCCCAGATTCTGATGATT 1099930 >seq2744 Length=396707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 48410 GTAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGA 48467 |||||| || || | ||||| || |||||| || || ||||| || || || || || Sbjct 260658 GTAAGTTTCAATGAGCAAAGAGTA--CATTTCAGAATGGATATTCTCTATGGCAATTTGG 260601 Query 48468 AATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAA 48527 || ||||| ||||| | ||||| | ||| | || ||| || || | ||| || | Sbjct 260600 AAGCCGTAGAAACAACGTGCTTCGGCGATTTTCACTTCCTGACTGAACCTCTCAATCAGA 260541 Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587 |||||||| || || ||||| ||| || || ||||| || ||||| ||||||||| Sbjct 260540 TTCTCATTGACGATACCATCGGAAGCGGCGAAGAATGCCAAGACATGAGAGATAAAATAT 260481 Query 48588 TTTTCGTTGGAAGTCAGTTT 48607 || || | |||| |||| || Sbjct 260480 TTCTCATCGGAATTCAGCTT 260461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694065210963040