Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4102 138 2e-27
seq33144 118 1e-21
seq1369 113 6e-20
seq10489 105 9e-18
seq5686 96.9 5e-15
seq2744 95.1 2e-14
>seq4102
Length=4342353
Score = 138 bits (152), Expect = 2e-27
Identities = 197/275 (72%), Gaps = 2/275 (1%)
Strand=Plus/Minus
Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429
|||| | |||||||| || |||| ||| | || || |||| || || || ||||
Sbjct 711680 GAAATTACCTAGACATCTGCTGATTGTTAGTACAAGCGTTGAATAGCGTTGGTGAAGCAT 711621
Query 78430 GCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488
| ||||| || |||||| || || |||||| ||||| ||| || || ||||| |
Sbjct 711620 GTGTAAAATATCGTTCAGACAAATA-ATTGTACGTTTCTATAACTTTGTCAATGTCGTTT 711562
Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548
| ||||| || || ||||| | |||||||||||| ||||| || ||||| |||| |
Sbjct 711561 TCGTGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCAACTATCTTGCCA 711502
Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608
|| ||||||| || || | |||| | ||||| ||||||| ||| || || |||
Sbjct 711501 TTGATTTTCAGCAGATAGCTTCTTTCGAGCGTTTTGAAACCAATATAATTATAACTAAAA 711442
Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATC 78643
|||| ||||| || ||| |||||| |||| ||||
Sbjct 711441 TCTCGATCGTATATTATAGCAGAATCTAGTCTATC 711407
Score = 114 bits (126), Expect = 2e-20
Identities = 218/317 (69%), Gaps = 8/317 (3%)
Strand=Plus/Minus
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
||||||||||||| ||| | | ||| || ||| | ||||| ||||||||| ||||||
Sbjct 712807 TACCAATAGGTCTGTGTTTTTGATTAGATGCTTTCGTCTCTGGGATAGGATAAAAATTAA 712748
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
||| || | ||||| ||||| | | ||| | ||| |||| || |||||| |
Sbjct 712747 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTTGCCACTGTTTTAAGTTTATCGA 712688
Query 77644 AATCAAATCTTCCA---TCTATA---ACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697
|||| || || ||| || |||||||| || | ||| ||||| |||| ||| |
Sbjct 712687 AATCGAAAGTTTTGGTGTCTGTATTGACAAACATATTAACAGCGATAGACGCTAAATTGC 712628
Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757
| || || || || || | ||||| | || || ||||| ||||| || ||||
Sbjct 712627 ACACAGCAACTTCCCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTGCATT 712568
Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816
|||||||||| | || ||| || || ||| ||| | |||| || || ||||| |||
Sbjct 712567 TGATAGTGCCTAAATGTTGGTGATTTGATTTTCGATTACAATGA-TCTTTGTAAAGCATA 712509
Query 77817 AACGGAGTCCCGGTTTC 77833
| || || || |||||
Sbjct 712508 TAAGGTGTTCCAGTTTC 712492
Score = 95.1 bits (104), Expect = 2e-14
Identities = 163/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165
|| ||||| ||||| || || ||| |||||||||||||| | | ||| |||||
Sbjct 713379 AGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGCCTCACGTAGATATTG 713320
Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225
|| || || ||||| | |||||| || || || ||||| || || || || || ||||||
Sbjct 713319 CTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGC 713260
Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGAT 77283
|||||||| | || | |||||| | || ||| || ||| || |||| | |
Sbjct 713259 ATAGGTGCTATTAAAAGTGAATTTCTCACTCC--GTGCTCCGCGATCTTCGCTTTCAATT 713202
Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338
| ||||| ||| | ||| | ||| ||| | ||| | ||||||||| || ||
Sbjct 713201 CATCCCAATTCCATAAATCCGTTGGTTTAACGTTCCACATATCGTATTGGAGGAT 713147
Score = 86.0 bits (94), Expect = 9e-12
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143
||||| || | ||| || | |||||||| |||||||||||||| ||| || || | ||
Sbjct 712083 TTAAGTTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCTAAATAAATAGCAAATGCT 712024
Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA-AACTCTCAA 78202
|| |||||||| || ||||||||||| | ||| || | | |||||| |||| ||||
Sbjct 712023 CCTGGTCGTTTGTTTCCTCCCTGATCAACATAAACAGCTATTTCATTATACAACT-TCAA 711965
Query 78203 CATTGGAATAATACCGTTAGATGT 78226
| | || | |||||||| |||
Sbjct 711964 AACGGAAACCAAACCGTTAGTTGT 711941
>seq33144
Length=491
Score = 118 bits (130), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTC 78466
||||||| ||| || | ||||||||||| || |||||| || || |||||| |||||
Sbjct 491 TTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATA-ATTGTACGTTTC 433
Query 78467 AATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTG 78526
|||||| || ||||| || ||||| || | ||||| | ||| |||||||| ||
Sbjct 432 TATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTAACATATGTTG 373
Query 78527 AGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 78586
||| || ||||| |||| ||| ||||| | || || | |||| | ||||||||
Sbjct 372 AGGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTTAAA 313
Query 78587 ACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGT 78638
| || ||| | | |||||||| ||||| || |||||||||| ||||
Sbjct 312 ATGAATATAATCAAAACCAAAGTCTCGATCGTATATTATAACAGAATCTAGT 261
>seq1369
Length=41173
Score = 113 bits (124), Expect = 6e-20
Identities = 169/236 (72%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGT 78463
|| ||||||| ||| || | ||||||||||| || |||||| || || |||||| ||
Sbjct 40785 GCGTTAAATAGTGTTGGTAAAGCATGCGTAAAATATCGTTCAGATAAATA-ATTGTACGT 40843
Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523
||| |||||| || ||||| || ||||| || | ||||| | ||| ||||||||
Sbjct 40844 TTCTATAGCTTTGTCAATGTCGTTTTCGTGAATACCAATAGCTACTCTCATTAACATATG 40903
Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG-TTT 78582
||||| || ||||| |||| ||| ||||| | || || | |||| | | |||
Sbjct 40904 TTGAGGCCTCCCAACCATCTTGCCATTAATTTTTAGCAGATAGCTTATTTCGAGCGTTTT 40963
Query 78583 TAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGT 78638
||||| || ||| | | |||||||| ||||| || |||||||||| ||||
Sbjct 40964 TAAAATGAATATAATCAAAACCAAAGTCTCGATCGTATATTATAACAGAATCTAGT 41019
>seq10489
Length=69996
Score = 105 bits (116), Expect = 9e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGT 78463
|| ||||||| ||| || | | ||||||||| ||| |||||| || || |||||| ||
Sbjct 56404 GCGTTAAATAGTGTTGGTAAAGGATGCGTAAAATATTGTTCAGATAAATA-ATTGTACGT 56462
Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523
||| ||| || || ||||| || |||||| || | ||||| | ||||||||||||
Sbjct 56463 TTCTATAACTTTGTCAATGTCGTTTTCATGAATACCAATAGCTACTCTCATCAACATATG 56522
Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583
||||| || ||| || |||| ||| ||||| | || || | |||| | |||||
Sbjct 56523 TTGAGGCCTCTCACCCATCTTGCCATTGATTTTTAGCAGATAGCTTCTTTCGAGCGTTTT 56582
Query 78584 AAAACCAAAATA 78595
|||| ||| |||
Sbjct 56583 AAAATCAATATA 56594
>seq5686
Length=2262380
Score = 96.9 bits (106), Expect = 5e-15
Identities = 180/265 (68%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
|||| |||| ||||||| | | | || | ||| || ||||| | ||||||| || |||
Sbjct 1099666 TACCGATAGATCTATGTTTATCACATGACAATTTTGCGTCTGGTAGAGGATAAAAACTAA 1099725
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
||| || ||||||| | ||| || | ||| | || ||||| |||||| ||
Sbjct 1099726 GGTCAATCATTTTATCCAAATTATAGGTGACAATTTTTGCTACTTCCTTAAGTTTATAAA 1099785
Query 77644 AATCAAATCTTCCATCTATA------ACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697
| ||||| ||| || || || |||||||| | ||| || || || | ||||
Sbjct 1099786 AGTCAAAAGTTCTCTCATTAGAATTCACGAACATGTTAACAGCAATTGAAGCCATGTTAC 1099845
Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757
| | || || |||| ||| | | |||||| | || |||||| | | | | || ||||
Sbjct 1099846 ACATGGCAACTTCATCAGCACTTGAATATTGAACTACTTCGGTAGAGAAACTGCTGCATT 1099905
Query 77758 TGATAGTGCCCAGATTTTGTTGGTT 77782
| || ||||||||||| || || ||
Sbjct 1099906 TAATTGTGCCCAGATTCTGATGATT 1099930
>seq2744
Length=396707
Score = 95.1 bits (104), Expect = 2e-14
Identities = 142/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 48410 GTAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGA 48467
|||||| || || | ||||| || |||||| || || ||||| || || || || ||
Sbjct 260658 GTAAGTTTCAATGAGCAAAGAGTA--CATTTCAGAATGGATATTCTCTATGGCAATTTGG 260601
Query 48468 AATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAA 48527
|| ||||| ||||| | ||||| | ||| | || ||| || || | ||| || |
Sbjct 260600 AAGCCGTAGAAACAACGTGCTTCGGCGATTTTCACTTCCTGACTGAACCTCTCAATCAGA 260541
Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587
|||||||| || || ||||| ||| || || ||||| || ||||| |||||||||
Sbjct 260540 TTCTCATTGACGATACCATCGGAAGCGGCGAAGAATGCCAAGACATGAGAGATAAAATAT 260481
Query 48588 TTTTCGTTGGAAGTCAGTTT 48607
|| || | |||| |||| ||
Sbjct 260480 TTCTCATCGGAATTCAGCTT 260461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694065210963040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |