Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4102 114 2e-20 seq2744 96.9 5e-15 seq5686 86.0 9e-12 >seq4102 Length=4342353 Score = 114 bits (126), Expect = 2e-20 Identities = 204/295 (69%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 |||| | |||||||| || |||| ||| | || || || | || || || |||| Sbjct 711680 GAAATTACCTAGACATCTGCTGATTGTTAGTACAAGCGTTGAATAGCGTTGGTGAAGCAT 711621 Query 77025 GAGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCAT 77083 | || || || |||||| || || |||||| ||||| |||||| || || || | Sbjct 711620 GTGTAAAATATCGTTCAGACAAATA-ATTGTACGTTTCTATAACTTTGTCAATGTCGTTT 711562 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 | ||||| || ||||| || | |||||||||||| ||||| | || || |||| | Sbjct 711561 TCGTGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCAACTATCTTGCCA 711502 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 || ||||||| || || | |||| | ||||| ||||||| ||| || || ||| Sbjct 711501 TTGATTTTCAGCAGATAGCTTCTTTCGAGCGTTTTGAAACCAATATAATTATAACTAAAA 711442 Query 77204 TCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATAT 77258 |||| ||||| || ||| | |||| |||| | ||| || || ||| ||||| Sbjct 711441 TCTCGATCGTATATTATAGCAGAATCTAGTCTATCCGCATTATTCTTAATAATAT 711387 Score = 96.9 bits (106), Expect = 5e-15 Identities = 214/317 (68%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 ||||||||||||| ||| | | ||| || || | ||||| ||||| ||| |||||| Sbjct 712807 TACCAATAGGTCTGTGTTTTTGATTAGATGCTTTCGTCTCTGGGATAGGATAAAAATTAA 712748 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 || || | ||||| ||||| | ||| | ||| |||| || ||||| | Sbjct 712747 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTTGCCACTGTTTTAAGTTTATCGA 712688 Query 76239 AATCAAA---TTTTCCATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||| || ||| ||| | ||||||||||||| ||| ||||| |||| ||| | Sbjct 712687 AATCGAAAGTTTTGGTGTCTGTATTGACAAACATATTAACAGCGATAGACGCTAAATTGC 712628 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || || || | | ||||| | || || || || ||||| || || | Sbjct 712627 ACACAGCAACTTCCCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTGCATT 712568 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACA 76411 ||||||| || | || ||| || || ||| ||||| ||| || || ||||| | | Sbjct 712567 TGATAGTGCCTAAATGTTGGTGATTTGATTTTCGATTACAATGA-TCTTTGTAAAGCATA 712509 Query 76412 AACGGAGTTCCAGTTTC 76428 | || ||||||||||| Sbjct 712508 TAAGGTGTTCCAGTTTC 712492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 || ||||| ||||| || || ||| |||||||||||||| | | ||| ||||| Sbjct 713379 AGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGCCTCACGTAGATATTG 713320 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 || || || ||||| | |||||| || || || ||||| || || || || || || ||| Sbjct 713319 CTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGC 713260 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGAT 75878 |||||||| | || | |||||| | || ||| || ||| || |||| | | Sbjct 713259 ATAGGTGCTATTAAAAGTGAATTTCTCACTCC--GTGCTCCGCGATCTTCGCTTTCAATT 713202 Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 | ||||| ||| | ||| | |||| ||| | ||| | ||||||||| || || Sbjct 713201 CATCCCAATTCCATAAATCCGTTGGTTTAACGTTCCACATATCGTATTGGAGGAT 713147 Score = 86.0 bits (94), Expect = 9e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 75443 CTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATA 75502 |||||||| |||||||||| ||| ||||| | ||||||| |||| |||| Sbjct 713732 CTCCATCCAAAGAAATGCATCGATGTGAGTTTTTCAGTTGTCGGATCACCTATGTGAACG 713673 Query 75503 TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTC 75562 || | || || ||||||||||||||||| | |||||||||||||| | ||| Sbjct 713672 TTTAAAGATTGCGACTGATCGATGAAAGCTCCCCGATCAGCCGCCATTTCGAGAATTACT 713613 Query 75563 TTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 || || || |||||||| | |||||| ||| ||| | ||| || |||| Sbjct 713612 TTCTGCGGTATTTCCCATACTGTTTTGTAAAGCATTTTCAGATCGTCGGGAA 713561 >seq2744 Length=396707 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||| ||||| || || || || || || || || ||||| ||||| | |||||| Sbjct 260636 TACATTTCAGAATGGATATTCTCTATGGCAATTTGGAAGCCGTAGAAACAACGTGCTTCG 260577 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | || | || || || || | ||| || ||||||||| || || ||||| | Sbjct 260576 GCGATTTTCACTTCCTGACTGAACCTCTCAATCAGATTCTCATTGACGATACCATCGGAA 260517 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 || || || |||||||| ||||| ||||||||||| ||||||| | |||| || Sbjct 260516 GCGGCGAAGAATGCCAAGACATGAGAGATAAAATATTTCTCATCGGAATTCAGCTT 260461 >seq5686 Length=2262380 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| | || |||||||||||||| || || |||| ||| |||||||| |||| | || Sbjct 1101222 CTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAGTT 1101281 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| || |||||||| | | || || || |||| || || || |||| ||| Sbjct 1101282 GCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCAAT 1101341 Query 77459 TCTATAGTAGTAACTCC 77475 || || || || ||||| Sbjct 1101342 TCGATCGTTGTCACTCC 1101358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712314940211520