Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08]
69,511 sequences; 396,024,718 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4102 114 2e-20
seq2744 96.9 5e-15
seq5686 86.0 9e-12
>seq4102
Length=4342353
Score = 114 bits (126), Expect = 2e-20
Identities = 204/295 (69%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024
|||| | |||||||| || |||| ||| | || || || | || || || ||||
Sbjct 711680 GAAATTACCTAGACATCTGCTGATTGTTAGTACAAGCGTTGAATAGCGTTGGTGAAGCAT 711621
Query 77025 GAGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCAT 77083
| || || || |||||| || || |||||| ||||| |||||| || || || |
Sbjct 711620 GTGTAAAATATCGTTCAGACAAATA-ATTGTACGTTTCTATAACTTTGTCAATGTCGTTT 711562
Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143
| ||||| || ||||| || | |||||||||||| ||||| | || || |||| |
Sbjct 711561 TCGTGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCAACTATCTTGCCA 711502
Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203
|| ||||||| || || | |||| | ||||| ||||||| ||| || || |||
Sbjct 711501 TTGATTTTCAGCAGATAGCTTCTTTCGAGCGTTTTGAAACCAATATAATTATAACTAAAA 711442
Query 77204 TCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATAT 77258
|||| ||||| || ||| | |||| |||| | ||| || || ||| |||||
Sbjct 711441 TCTCGATCGTATATTATAGCAGAATCTAGTCTATCCGCATTATTCTTAATAATAT 711387
Score = 96.9 bits (106), Expect = 5e-15
Identities = 214/317 (68%), Gaps = 8/317 (3%)
Strand=Plus/Minus
Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178
||||||||||||| ||| | | ||| || || | ||||| ||||| ||| ||||||
Sbjct 712807 TACCAATAGGTCTGTGTTTTTGATTAGATGCTTTCGTCTCTGGGATAGGATAAAAATTAA 712748
Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238
|| || | ||||| ||||| | ||| | ||| |||| || ||||| |
Sbjct 712747 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTTGCCACTGTTTTAAGTTTATCGA 712688
Query 76239 AATCAAA---TTTTCCATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292
|||| || ||| ||| | ||||||||||||| ||| ||||| |||| ||| |
Sbjct 712687 AATCGAAAGTTTTGGTGTCTGTATTGACAAACATATTAACAGCGATAGACGCTAAATTGC 712628
Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352
| || || || || || | | ||||| | || || || || ||||| || || |
Sbjct 712627 ACACAGCAACTTCCCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTGCATT 712568
Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACA 76411
||||||| || | || ||| || || ||| ||||| ||| || || ||||| | |
Sbjct 712567 TGATAGTGCCTAAATGTTGGTGATTTGATTTTCGATTACAATGA-TCTTTGTAAAGCATA 712509
Query 76412 AACGGAGTTCCAGTTTC 76428
| || |||||||||||
Sbjct 712508 TAAGGTGTTCCAGTTTC 712492
Score = 95.1 bits (104), Expect = 2e-14
Identities = 163/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760
|| ||||| ||||| || || ||| |||||||||||||| | | ||| |||||
Sbjct 713379 AGTAGATGCGGATTGACGATGACAAACTCTCCAGACAATACGCGCCTCACGTAGATATTG 713320
Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820
|| || || ||||| | |||||| || || || ||||| || || || || || || |||
Sbjct 713319 CTCGTGTACGGTTCAATAGATTCGTTATTCCCTAAAATCTGCGCTGTCGAGGCCGTTGGC 713260
Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGAT 75878
|||||||| | || | |||||| | || ||| || ||| || |||| | |
Sbjct 713259 ATAGGTGCTATTAAAAGTGAATTTCTCACTCC--GTGCTCCGCGATCTTCGCTTTCAATT 713202
Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933
| ||||| ||| | ||| | |||| ||| | ||| | ||||||||| || ||
Sbjct 713201 CATCCCAATTCCATAAATCCGTTGGTTTAACGTTCCACATATCGTATTGGAGGAT 713147
Score = 86.0 bits (94), Expect = 9e-12
Identities = 122/172 (71%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 75443 CTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATA 75502
|||||||| |||||||||| ||| ||||| | ||||||| |||| ||||
Sbjct 713732 CTCCATCCAAAGAAATGCATCGATGTGAGTTTTTCAGTTGTCGGATCACCTATGTGAACG 713673
Query 75503 TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTC 75562
|| | || || ||||||||||||||||| | |||||||||||||| | |||
Sbjct 713672 TTTAAAGATTGCGACTGATCGATGAAAGCTCCCCGATCAGCCGCCATTTCGAGAATTACT 713613
Query 75563 TTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
|| || || |||||||| | |||||| ||| ||| | ||| || ||||
Sbjct 713612 TTCTGCGGTATTTCCCATACTGTTTTGTAAAGCATTTTCAGATCGTCGGGAA 713561
>seq2744
Length=396707
Score = 96.9 bits (106), Expect = 5e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980
|||||||| ||||| || || || || || || || || ||||| ||||| | ||||||
Sbjct 260636 TACATTTCAGAATGGATATTCTCTATGGCAATTTGGAAGCCGTAGAAACAACGTGCTTCG 260577
Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040
| || | || || || || | ||| || ||||||||| || || ||||| |
Sbjct 260576 GCGATTTTCACTTCCTGACTGAACCTCTCAATCAGATTCTCATTGACGATACCATCGGAA 260517
Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096
|| || || |||||||| ||||| ||||||||||| ||||||| | |||| ||
Sbjct 260516 GCGGCGAAGAATGCCAAGACATGAGAGATAAAATATTTCTCATCGGAATTCAGCTT 260461
>seq5686
Length=2262380
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
||||| | || |||||||||||||| || || |||| ||| |||||||| |||| | ||
Sbjct 1101222 CTAAAGACCTTCTTTGTTTCCTTGTGCAGGTTGGATATGGCAATTCTAGCTGCTAAAGTT 1101281
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||| || |||||||| | | || || || |||| || || || |||| |||
Sbjct 1101282 GCATAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCAAT 1101341
Query 77459 TCTATAGTAGTAACTCC 77475
|| || || || |||||
Sbjct 1101342 TCGATCGTTGTCACTCC 1101358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712314940211520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |