Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq68007 91.5 1e-13 seq5117 87.8 2e-12 >seq68007 Length=840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| || || | ||||||||||| |||||| | ||| ||| | Sbjct 240 AATGCAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTC 299 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | |||||| ||||| || |||||||| | || ||||| Sbjct 300 GGATACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCA 359 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | || | || || ||||| | ||||| || ||| | ||||||| || Sbjct 360 ACAGCGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAA 419 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||||||||| || ||||| || || || ||||| || Sbjct 420 CATCCAAAAGGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 467 >seq5117 Length=2329582 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 111175 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111234 |||||| ||||||| |||||||| ||| |||| |||||||||||| || |||| Sbjct 1167936 GTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAACAAAGACTGATTTTC 1167995 Query 111235 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111294 || ||||| ||| | || || |||| || |||| || ||||| || ||||||||| Sbjct 1167996 GCTGGCAAGCAACTCGAGGACGGACGAACTTTGTCCGACTACAATATCCAGAAAGAATCT 1168055 Query 111295 ACACTACA 111302 ||||| || Sbjct 1168056 ACACTTCA 1168063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421453856182936