Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5959 140 2e-28 seq52431 125 5e-24 seq1104 122 6e-23 seq5117 111 1e-19 seq68007 105 5e-18 >seq5959 Length=1871824 Score = 140 bits (154), Expect = 2e-28 Identities = 176/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | || || ||||| || |||||| ||||||||||| Sbjct 1420630 TTGCATTCCTCCTCGAAGACGTAGAACTAGATGAAGTGTAGACTCCTTCTGGATGTTGTA 1420689 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| | | || ||||| ||||| || |||||||||| ||| |||||||| Sbjct 1420690 GTCGGAGAGAGTTCTTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGATC 1420749 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||| || || ||||| |||| | ||| |||| || || | | Sbjct 1420750 TGGAGGGATACCTTCTTTGTCTTGGATCTT-AGCTTTGACATTCTCTATAGTATCAGAAG 1420808 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||||||| | || || || ||||| |||||||| ||||| ||||||||||||||| Sbjct 1420809 CTTCCACCTCAAGAGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATTTGCATGATG 1420867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCA 44210 || |||||||| |||| ||||| | | || || || || || || ||||| |||| Sbjct 1420451 TGAATGTTGTAGTCGGAAAGAGTT--CTACCATCCTCAAGTTGTTTACCAGCAAAAATCA 1420508 Query 44211 AACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTA 44270 |||||||||||||| ||| | || || || ||| || || ||||| || ||| Sbjct 1420509 GACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTA 1420568 Query 44271 TGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGA 44330 | ||||| | | ||| || || | ||||| || || || || || |||||||| |||| Sbjct 1420569 TTGTGTCTGAAGCTTCAACTTCAAGAGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAGA 1420628 Query 44331 TTTGCAT 44337 ||||||| Sbjct 1420629 TTTGCAT 1420635 >seq52431 Length=384 Score = 125 bits (138), Expect = 5e-24 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | ||| ||||| ||||| ||| |||||||| |||||||| Sbjct 311 TTGCATTCCTCCTCGAAGACGCAAAACCAGATGAAGTGTGGATTCCTTTTGAATGTTGTA 252 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | | || || || || || || ||||| |||| |||||||||| Sbjct 251 GTCGGAAAGAGTT--CTACCATCCTCAAGTTGTTTACCAGCAAAAATCAGACGCTGCTGA 194 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| ||| | || || || || || || ||||| || |||| ||||| | Sbjct 193 TCTGGAGGAATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCTATTGTGTCTGAA 134 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||| || || | || || || || |||||||| |||||||||||||| |||||| Sbjct 133 GCTTCAACTTCAAGGGTGATGGTTTTACCCGTGAGAGTCTTCACGAAGATCTGCATG 77 >seq1104 Length=1074228 Score = 122 bits (134), Expect = 6e-23 Identities = 147/196 (75%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || ||||||||||||| || |||| | || |||||||| || || || ||| Sbjct 391035 CCTTTCTGAATGTTGTAATCGGAAAGAGTGCGCCCATCCTCCAGCTGTTTGCCAGCGAAG 390976 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||||| ||||||| || | || ||||| ||| ||||| ||| || || Sbjct 390975 ATGAGCCGCTGTTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT-AACATT 390917 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| || || ||||| | ||||| ||||| ||||||||||| ||||| Sbjct 390916 CTCGATGGTGTCGGAGGCCTCTACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCAC 390857 Query 44326 GAAGATTTGCATGATG 44341 ||||| ||||| ||| Sbjct 390856 AAAGATCTGCATAATG 390841 >seq5117 Length=2329582 Score = 111 bits (122), Expect = 1e-19 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || ||| | |||| |||||| || ||||| ||||| ||||| || Sbjct 1164798 CATTCCGCCGCGCAATCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAGTC 1164739 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || || || |||| || |||||||| || || ||||||||||| ||||| || | Sbjct 1164738 AGACAAGGTG-CGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAG 1164680 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| ||| ||||| ||| | | |||| | || ||||||| | Sbjct 1164679 GTGGGATGCCTTCCTTGTCCTGAATCTT-TGCCTTTACGTTCTCAATAGTGTCGGAAGCC 1164621 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||| | || || |||||||| || | ||||| || || || |||||| || Sbjct 1164620 TCGACCTCGAGGGTTATGGTCTTTCCGGTCAACGTCTTTACAAAAATCTGCATGGTG 1164564 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || || ||||| | ||| || |||| || || ||||| || |||||| Sbjct 1164986 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1164927 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | || ||||| | ||| | ||||| || ||| || ||| |||| | ||| Sbjct 1164926 ATCAATCTTTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTC-GCTTTGACGTT 1164868 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | ||| ||||||| ||||| ||||||||||| | ||| || || Sbjct 1164867 CTCGATCGTGTCCGAAGCTTCTACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTAAC 1164808 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 1164807 GAAGATCTGCAT 1164796 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||||||| |||| || | ||| || ||||| || |||||||| Sbjct 1167407 CATACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATC 1167348 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| |||| || ||||| || |||||||||||||| | ||| ||||| | Sbjct 1167347 AGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAATCTCTGTTGATCGGG 1167288 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||| || || || ||| |||| | |||| | || ||||| | | | Sbjct 1167287 AGGAATACCTTCTTTGTCTTGAATTTTCGCCTTC-ACGTTCTCGATTGTGTCTGAAGCCT 1167229 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || |||||||| || | || || ||||| || ||||| Sbjct 1167228 CGACCTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 1167177 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||||| |||| || || ||| |||||||| ||||| ||||| Sbjct 1167863 CATACCGCCACGAAGCCTCAAAACCAAATGCAGAGTGGATTCCTTTTGAATGTTATAATC 1167804 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || || || || || ||||||||||| | ||| ||||||| Sbjct 1167803 AGACAGTGTGCGACCGTCTTCGAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCTGG 1167744 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| | | || |||| | ||| | || ||||| | | | Sbjct 1167743 AGGAATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCTGACGCCT 1167685 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || ||||||||||| | || || || || || ||||| Sbjct 1167684 CAACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTGACAAAAATCTGCAT 1167633 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTT-TTGGATGTTGTAAT 44165 ||| || || | |||||||| || | || | ||| ||||| ||| || ||||||| Sbjct 1167179 CATACCACCGCGAAGTCTCAAAACTAAATGTAACGTAGATTCCTTCTTGAATATTGTAAT 1167120 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | | | ||| |||| || || || || |||||||||||||| | ||||||||| | Sbjct 1167119 CAGACAATGTGCGTCCGTCTTCGAGTTGTTTTCCGGCAAAGATCAATCTCTGCTGATCGG 1167060 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | ||| || || || || ||| |||| | |||| | || ||||| | | Sbjct 1167059 GAGGAATACCCTCTTTGTCTTGAATTTTCGCCTTC-ACGTTCTCGATTGTGTCTGAAGCC 1167001 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || || || ||||| || || ||||| || ||||| Sbjct 1167000 TCGACCTCCAATGTGATAGTTTTGCCAGTGAGAGTTTTGACGAAAATCTGCAT 1166948 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 || || || ||||||||||| | ||||| | || | || || ||||| || ||||| | Sbjct 1165214 TCTTTCTGAATGTTGTAATCAGATAGAGTTCG-GC-CATCTTCGAGCTGTTTTCCGGCGA 1165157 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 ||||||| | ||||||||||| ||| | |||||||| ||| | | || |||| | Sbjct 1165156 AGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTATCC-TGAATTTTGGCTTTGACA 1165098 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| | || ||||| | | || || |||| || || ||||||||||| | || || Sbjct 1165097 TTCTCGATCGTGTCTGACGCCTCAACTTCCAATGTGATGGTCTTTCCCGTCAAAGTTTTG 1165038 Query 44324 ACGAAGATTTGCAT 44337 || || || ||||| Sbjct 1165037 ACAAAAATCTGCAT 1165024 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || || ||||| | ||| || |||| || || ||||| || |||||| Sbjct 1167595 TCCTTCTGAATATTATAATCTGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 1167536 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||||||||| | ||| | ||||| || ||| | | || |||| || || Sbjct 1167535 ATCAACCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCC-TGAATTTTAGCTTTAACATT 1167477 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | ||| || |||| || ||||| || || || || || || || Sbjct 1167476 CTCGATCGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTAAGTGTTTTGAC 1167417 Query 44326 GAAGATTTGCAT 44337 || || ||||| Sbjct 1167416 AAAAATCTGCAT 1167405 >seq68007 Length=840 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||||||||||| || | |||| || ||||| ||||| || ||| Sbjct 431 TCCTTTTGGATGTTGTAATCGGAAAGAGTCCTACCGTCTTCTAGCTGTTTCCCTGCGAAG 372 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-T 44265 || |||||||| ||||| | || | ||||| || || ||| || |||| | | | Sbjct 371 ATTAAACGCTGTTGATCAGGTGGGATTCCTTCTTTATCTTGTAT-TTTGGCTTTTACGTT 313 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||||| || | | ||| || || | ||||| || || || ||||| |||||||| Sbjct 312 TTCTATGGTATCCGAAGCTTCAACTTCAAGGGTAATTGTTTTGCCGGTGAGAGTCTTCAC 253 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 252 AAAAATTTGCAT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359685428620287