Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solenopsis_20invicta_20[refseq_20GCF_5F000188075.1_202011-02-08] 69,511 sequences; 396,024,718 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5959 185 2e-41 seq68007 172 1e-37 seq5117 172 1e-37 seq1104 143 6e-29 >seq5959 Length=1871824 Score = 185 bits (204), Expect = 2e-41 Identities = 165/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| ||||| |||||||| ||||| || ||||||||| || || Sbjct 1420860 CAAATCTTTGTGAAAACCCTCACTGGAAAAACCATCACTCTTGAGGTGGAAGCTTCTGAT 1420801 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| ||||| || ||||||||||| |||||||| || |||||| Sbjct 1420800 ACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGTATCCCTCCAGATCAGCAA 1420741 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| || || ||||||||||| ||||| |||| || ||| || Sbjct 1420740 CGTCTGATCTTTGCTGGAAAGCAACTGGAAGATGGAAGAACTCTCTCCGACTACAACATC 1420681 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || ||||| ||||| ||| Sbjct 1420680 CAGAAGGAGTCTACACTTCATCTAGTT 1420654 Score = 116 bits (128), Expect = 9e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| ||||| || || ||||| || || || || || ||| |||||| Sbjct 1420632 CAAATCTTTGTGAAGACTCTTACTGGCAAAACCATTACTCTTGAAGTTGAAGCTTCAGAC 1420573 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || ||||||||||| ||||| ||||| || ||||| Sbjct 1420572 ACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCAGCAG 1420513 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || || || || ||||| || || ||||| || |||||| |||| || ||| Sbjct 1420512 CGTCTGATTTTTGCTGGTAAACAACTTGAGGATGGTAGAACTCTTTCCGACTACAAC 1420456 >seq68007 Length=840 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| |||||||| || ||||| || ||||| || || ||| || || Sbjct 244 CAAATTTTTGTGAAGACTCTCACCGGCAAAACAATTACCCTTGAAGTTGAAGCTTCGGAT 303 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| || || || || |||||||||||||| || || || || Sbjct 304 ACCATAGAAAACGTAAAAGCCAAAATACAAGATAAAGAAGGAATCCCACCTGATCAACAG 363 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || |||||||| ||||| || ||||||||| ||||||| ||| || Sbjct 364 CGTTTAATCTTCGCAGGGAAACAGCTAGAAGACGGTAGGACTCTTTCCGATTACAACATC 423 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| ||||| || | ||||| |||| Sbjct 424 CAAAAGGAATCTACACTCCACTTAGTTTTACGACT 458 Score = 154 bits (170), Expect = 4e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || || ||||| |||||||| || || ||| |||||| Sbjct 16 CAGATCTTCGTAAAAACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCTTCAGAC 75 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || ||||||||||| ||||| || || || || ||| Sbjct 76 ACAATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAACAA 135 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| || || ||||| || |||||| |||| |||||| | Sbjct 136 CGTTTGATTTTTGCTGGCAAACAACTGGAGGATGGCAGAACTCTTTCCGACTATAACATT 195 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||||||||| ||||| ||| || Sbjct 196 CAAAAGGAATCAACACTTCATCTGGTTCTG 225 >seq5117 Length=2329582 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | |||||||| || ||||| | ||||| || |||||| Sbjct 1167180 CAGATTTTCGTCAAAACTTTAACAGGAAAGACCATCACATTGGAGGTCGAGGCTTCAGAC 1167239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || || ||||| ||||||||||| || ||||| || || || Sbjct 1167240 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCTCCCGATCAACAG 1167299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||||||||||||||| ||| | || | | ||||| || | Sbjct 1167300 AGATTGATCTTTGCCGGAAAACAGCTCGAAGACGGACGCACATTGTCTGATTACAATATT 1167359 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||| ||||| | ||||||||||| Sbjct 1167360 CAAAAAGAATCCACATTGCATTTGGTTTTGAGACT 1167394 Score = 170 bits (188), Expect = 5e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || ||||| || ||||| | || || || |||||| Sbjct 1165027 CAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCAGAC 1165086 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| || |||||||| || |||||||||||||| || ||||| Sbjct 1165087 ACGATCGAGAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAGCAG 1165146 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||||||||||||||||||||| | ||||| | ||||| ||| | Sbjct 1165147 AGGTTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGAACTCTATCTGATTACAACATT 1165206 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||||||| ||||| | ||| Sbjct 1165207 CAGAAAGAATCAACATTGCATTTGGTT 1165233 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || ||||| || ||||| | || || || |||||| Sbjct 1167636 CAGATTTTTGTCAAAACTTTGACGGGAAAGACCATCACATTGGAAGTTGAGGCGTCAGAC 1167695 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| || ||||||||||| |||||||| ||||| || || || Sbjct 1167696 ACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCTCCAGATCAACAG 1167755 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| |||||||| || | || || | ||||||||| | Sbjct 1167756 AGATTGATCTTTGCTGGAAAACAACTCGAAGACGGTCGCACACTGTCTGATTATAACATT 1167815 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || |||||| | |||||||| || Sbjct 1167816 CAAAAGGAATCCACTCTGCATTTGGTTTTGAGGCT 1167850 Score = 152 bits (168), Expect = 1e-31 Identities = 164/216 (76%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||||||||| || ||||| ||||| | ||||| || |||||| Sbjct 1166951 CAGATTTTCGTCAAAACTCTCACTGGCAAAACTATCACATTGGAGGTCGAGGCTTCAGAC 1167010 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || || ||||| |||||||| || || ||||| || ||||| Sbjct 1167011 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCCGATCAGCAG 1167070 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| |||||||| ||| | || | | ||||| || | Sbjct 1167071 AGATTGATCTTTGCCGGAAAACAACTCGAAGACGGACGCACATTGTCTGATTACAATATT 1167130 Query 178104 CAA-AAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || ||||| || | ||| | ||||||||||| Sbjct 1167131 CAAGAAGGAATCTACGTTACATTTAGTTTTGAGACT 1167166 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || || ||||||||||| || || || ||| |||||| Sbjct 1167408 CAGATTTTTGTCAAAACACTTACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCAGAC 1167467 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || ||||||||||||||||||||||||||||| ||||| Sbjct 1167468 ACGATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCGGATCAGCAG 1167527 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| || || ||||| || | ||||| | |||||||| | Sbjct 1167528 AGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAATATT 1167587 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || |||| |||| || Sbjct 1167588 CAGAAGGAATCGACCTTGCA-CTTGGTT 1167614 Score = 145 bits (160), Expect = 2e-29 Identities = 160/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | || ||||| || || ||||||||||| || || ||| Sbjct 1164571 CAGATTTTTGTAAAGACGTTGACCGGAAAGACCATAACCCTCGAGGTCGAGGCTTCCGAC 1164630 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||||||||| ||||| ||||| || ||||||||| Sbjct 1164631 ACTATTGAGAACGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCTGACCAGCAA 1164690 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| ||||| ||||| ||||| ||| | || |||| | || || || | Sbjct 1164691 CGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGCAC-CTTGTCTGACTACAATAT 1164749 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| || |||||||| || || |||| || Sbjct 1164750 CCAGAAGGAATCAACCCTTCA-CTTGGTT 1164777 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || ||||| || || || | ||||| ||| || ||| Sbjct 1164799 CAGATCTTCGTTAAAACCTTGACGGGAAAGACAATTACTTTGGAGGTAGAAGCTTCGGAC 1164858 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| || ||||||||||||||||| ||||||||||| || ||| Sbjct 1164859 ACGATCGAGAACGTCAAAGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAACAA 1164918 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || || ||||| || | ||||| | |||||||| | Sbjct 1164919 AGATTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGTACTCTCTCAGATTATAATATT 1164978 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || |||| |||| || Sbjct 1164979 CAGAAGGAATCGACCTTGCA-CTTGGTT 1165005 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 178019 AGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||| || || ||||| || ||||| || | ||||| ||||||||||| || |||||||| Sbjct 1166818 AGAGGGTATTCCTCCCGATCAGCAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGG 1166877 Query 178079 AAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || | | ||||||||| | || |||||||| ||| ||||| | ||||||||||| Sbjct 1166878 TCGCACATTATCTGATTATAACATTCAGAAAGAATCCACATTGCATTTGGTTTTGAGACT 1166937 >seq1104 Length=1074228 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||| || || || || ||||| ||||| || ||| ||| Sbjct 390848 CAGATCTTTGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTAGAGGCCTCCGAC 390907 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || |||||||| || || || || Sbjct 390908 ACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAACAG 390967 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || |||||||| || ||||| | |||||| ||||||| ||| | Sbjct 390968 CGGCTCATCTTCGCTGGCAAACAGCTGGAGGATGGGCGCACTCTTTCCGATTACAACATT 391027 Query 178104 CAAAAAG 178110 || |||| Sbjct 391028 CAGAAAG 391034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202659145332134