Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1843 205 8e-48 seq1732 95.1 1e-14 >seq1843 Length=1107702 Score = 205 bits (226), Expect = 8e-48 Identities = 582/886 (66%), Gaps = 15/886 (2%) Strand=Plus/Plus Query 105613 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 105672 || || |||||||| || || ||||| || || || || | || || ||||| || Sbjct 491236 ACTCCAGTCCAGCCTCGTCCATACATAGCAACACCAACGACAATCTTCTTGGGGCTAACA 491295 Query 105673 CCTTGTTTCAGTAACGCATCGACAGCGTAGTGTGTAGTGTATAGCTCTTCCGAGTTCCAA 105732 ||||| || | | |||| || ||| || ||||| ||| | | |||||| Sbjct 491296 CCTTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAT 491355 Query 105733 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGT-GTTTGACCAAGCCCCTTTAAA 105791 ||| ||||| | || |||| ||| || | || ||| |||||||| || || || Sbjct 491356 GCTGGGGCGTACAAACCTGCCTGGTGGCC-AAGTGTGTCGTTAGACCAAGCGCCCTTGAA 491414 Query 105792 ATCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTACCAC 105851 || |||||||| | || || | | | ||| || ||||| ||||| || || Sbjct 491415 GTCATAACTCATCAAGAAGATGTGATCCATGTACTGCTGAGCTTCTTTGTAGTCCACAAC 491474 Query 105852 GGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTG 105911 |||||||| |||| | ||| ||||| || |||||||| | | || || | Sbjct 491475 CTGGATCTTGTCCCAACCGGAGCTGATAGCAGAAGTCAATTCGTACTTCTTACCAGTCTT 491534 Query 105912 CGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTTTGGC 105971 || || |||| | ||| | || |||| || || | |||| || | Sbjct 491535 GGCAGAAAGCTCGTTCAACATCTGTCTGAGTTCCTTCATCAGC----TGTACGTA--GAT 491588 Query 105972 GTCACCGTCCGCATCGCCCAACGAC----GGGTTAGCCCCTTTGCCGCCCGGAAACTCCC 106027 || |||||| || | | | ||| ||||| || ||||| || || || || |||| Sbjct 491589 GTGACCGTCTTCAGGGGC-ACCGAGATCAGGGTTGGCTCCTTTACCACCAGGGAATTCCC 491647 Query 106028 AATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATCTA 106087 |||| ||||| ||||| || ||||| ||||| || || || ||||| || ||| | | Sbjct 491648 AATCAATGTCAACACCATCGAAGAACTTCCAGGTTTCGAGGAAGTCCTTGACTGAAGCAA 491707 Query 106088 CAAAAACGTTTCTTTTTTCAACATC-GTGCATAAAATAAAATGGGTCTGATAGAGTCCAG 106146 | || || ||| || | | || ||| | || | | || ||||| | || ||||| Sbjct 491708 CGAAGCGGTGTCTCTTCACTTCGTCAGTGAAAAAGA-AGAACGGGTCAGCCAGGGTCCAT 491766 Query 106147 CCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGT 106206 || || | ||||| | || || | | || | ||| ||| | |||||| || Sbjct 491767 CCACCAACAGAAGGCAAGATCTTCAGGTCTGGTCTCGCTTGTTTCAACATCATCAATTGG 491826 Query 106207 CCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACG 106266 || || || || || || ||||||||||| | |||| ||| || || |||||||| | Sbjct 491827 CCGAAGTTACCCTTGTAAGGCTCGTTCCAGGATGACAAACCCTTCTGTGGTTTTTGGAGT 491886 Query 106267 GCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGC 106326 || ||||| |||||||| || | || ||||||||||| | || |||| ||||| ||| Sbjct 491887 GCAGCCCAAGGATCGTGGATAGATACCTTGAAATCTTCCCTGCCGCTGCATGATCTCTGC 491946 Query 106327 AAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAG 106386 | || || || || || ||| || | |||||| || ||||| || || ||| Sbjct 491947 AGAGCTTGGAAACTGCCTTCGATCTCCTTCAAACTGTCGTTGATGCCATCTCCTCCACAG 492006 Query 106387 ATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGA 106446 || || ||||||||||||| || || | | ||| || | ||| || ||| ||||| Sbjct 492007 ATTGGGATGAAACCATACAGCAGATGAGTAAGATTGGGGATGGGCACACGGTCAACGGGG 492066 Query 106447 AAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAGCGACAA 106492 || || | ||| |||||||| ||||||||||| || | |||| Sbjct 492067 AACTTCCTTGGGTAGACACCCCATTCAACAAAGTAGGCGCCAACAA 492112 >seq1732 Length=1186882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| ||||||| ||||| || || ||||| || ||| ||||| | Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || ||||| ||| | ||| || || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| ||||||||| |||||||| | |||| || | ||||| || Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || || || | ||| | || | ||||| || Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGG 785462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| ||||| ||||||||||| || || ||||| | Sbjct 786825 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAAACCATCACTCTTGAGGTTGAACCTTCT 786884 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| || || || || ||||| | ||| || || Sbjct 786885 GACACGATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 786944 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | |||||||| || ||||| || |||||||| | ||| || |||| ||||| Sbjct 786945 CAGCGTCTTATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAAC 787004 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || || ||| ||||| | || | ||||| || Sbjct 787005 ATCCAGAAAGAATCGACCCTGCACTTGGTGCTCCGTCTCCGAGGTGG 787051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428323492053380