Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1843 217 1e-51 seq1046 100 2e-16 seq1732 95.1 1e-14 >seq1843 Length=1107702 Score = 217 bits (240), Expect = 1e-51 Identities = 348/497 (70%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 97764 GGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTC 97823 ||||| || ||||| || || || ||||||||||| | ||| |||||||| || || ||| Sbjct 491617 GGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACACCATCGAAGAACTTC 491676 Query 97824 CACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTCAACGTC-GTG 97882 || || | || ||||| || || | || || || ||| || | |||| ||| Sbjct 491677 CAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTCTTCACTTCGTCAGTG 491736 Query 97883 CATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATG 97942 | | | |||||||||| | ||| ||||| || || | ||||| | || || || | Sbjct 491737 AAAAAGA-AGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCAAGATCTTCAGGTC 491795 Query 97943 TGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCA 98002 ||| | ||| |||| | ||||||||| || || || || ||||| || |||||||| Sbjct 491796 TGGTCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGTAAGGCTCGTTCCA 491855 Query 98003 AGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTT 98062 | |||| ||||| || |||||||| | || ||||| ||||||||||| | || || Sbjct 491856 GGATGACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGTGGATAGATACCTT 491915 Query 98063 GAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTT 98122 ||||||||| | || ||||| |||| |||||||||| ||||| || || || Sbjct 491916 GAAATCTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACTGCCTTCGATCTCCTT 491975 Query 98123 GAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTGCGA 98182 | |||||| || ||||| || || ||||| || |||||||| |||| || || | Sbjct 491976 CAAACTGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCATACAGCAGATGAGT 492035 Query 98183 TAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGAC 98242 | ||| || | ||| || ||| ||||| || | | ||| |||||||| || || Sbjct 492036 AAGATTGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTAGACACCCCATTCAAC 492095 Query 98243 AAAGTACGCAGCGACAA 98259 |||||| || | |||| Sbjct 492096 AAAGTAGGCGCCAACAA 492112 >seq1046 Length=465179 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| | ||||| |||||||| ||| ||| |||| || | Sbjct 190013 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTGGAAGCCTC 190072 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| ||| || || ||||| || | || ||| || Sbjct 190073 AGACACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCA 190132 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | |||||||| || || ||||| ||||||||| | ||| | | |||||||| Sbjct 190133 GCAACGTCTTATCTTCGCTGGTAAACAGTTGGAAGATGGCCGTACTCTCTCTGATTACAA 190192 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| || || ||| ||||| | | || ||||||| Sbjct 190193 CATCCAAAAGGAATCCACCCTCCACTTGGTGCTCAGGTTGAGAGGAGG 190240 >seq1732 Length=1186882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| ||||||| ||||| || || ||||| || ||| ||||| | Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || ||||| ||| | ||| || || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | ||||||||||| |||||||||||||||||| | |||| || | ||||| || Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || ||||| || || || | ||| | || | ||||| || Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGG 785462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| ||||| ||||||||||| || || ||||| | Sbjct 786825 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAAACCATCACTCTTGAGGTTGAACCTTCT 786884 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| || || || || ||||| | ||| || || Sbjct 786885 GACACGATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 786944 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | |||||||| || ||||| || ||||||||| | ||| || |||| ||||| Sbjct 786945 CAGCGTCTTATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAAC 787004 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || ||||| || || ||| ||||| | || | ||||| || Sbjct 787005 ATCCAGAAAGAATCGACCCTGCACTTGGTGCTCCGTCTCCGAGGTGG 787051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410784804219944