Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq890 107 1e-18 >seq890 Length=2258411 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| ||| || ||||| ||| | || ||| ||||| ||||| || ||||| || || Sbjct 27666 GTGATATGTGCAATCATGTGAGTGAGTAAAGAGTAGCTGGCAATATTGAAAGGAACTCCC 27607 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| || ||||| || | | | || || | || ||||| | |||| Sbjct 27606 AGACCCATATCTGCGCTCCTTTGGTACAGCAGGCAAGATAATTTACCATCTGATACATGG 27547 Query 97237 AACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 |||||| ||| ||| ||||| || ||||| |||||||| | |||| | ||||| Sbjct 27546 AACTGAG-CAAGACAATGACATGGAGGCAAAGCCATTTTACTCAGATCTGATGGGTTCCA 27488 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGG 97326 ||||| |||| |||||||||||| | |||| Sbjct 27487 TGCACATATCAGCATTCTTCTATCTGCTGGG 27457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773873473720