Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq535 138 2e-27 seq1732 136 6e-27 >seq535 Length=1858795 Score = 138 bits (152), Expect = 2e-27 Identities = 210/294 (71%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| |||||| |||| |||| || Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGG-AAAACAATAACTTTAGAAGTTGAGCCATCA 56913 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||||||||||| ||||| || || |||||||| ||| Sbjct 56912 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 56853 Query 124659 CAAAGGCTTATTTTTGCAGG-AAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || || ||||| || ||| | || ||| | || ||| | || ||||| Sbjct 56852 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 56793 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 ||||||||||||||| || ||||||| |||||| | ||| ||||||| || |||| Sbjct 56792 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAAAA--- 56737 Query 124778 ATAAAAATTGATTGT-AAATAAATATCACTACAAATAATTTTATCTGTTATTTT 124830 ||| || || | |||||||| || || |||||||||| || |||| Sbjct 56736 --AAATGTTTCTTCTGAAATAAATTTCTTCTGAATGAATTTTATCTTTTTTTTT 56685 Score = 138 bits (152), Expect = 2e-27 Identities = 210/294 (71%), Gaps = 9/294 (3%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| |||||| |||| |||| || Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGG-AAAACAATAACTTTAGAAGTTGAGCCATCA 1714075 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||||||||||| ||||| || || |||||||| ||| Sbjct 1714076 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 1714135 Query 124659 CAAAGGCTTATTTTTGCAGG-AAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || || ||||| || ||| | || ||| | || ||| | || ||||| Sbjct 1714136 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 1714195 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 ||||||||||||||| || ||||||| |||||| | ||| ||||||| || |||| Sbjct 1714196 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAAAA--- 1714251 Query 124778 ATAAAAATTGATTGT-AAATAAATATCACTACAAATAATTTTATCTGTTATTTT 124830 ||| || || | |||||||| || || |||||||||| || |||| Sbjct 1714252 --AAATGTTTCTTCTGAAATAAATTTCTTCTGAATGAATTTTATCTTTTTTTTT 1714303 >seq1732 Length=1186882 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | || || || || || ||| | ||| ||||| | | Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| |||||||| || ||||| ||||| || ||||| || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || |||||||| || ||| | ||||| || ||||||||| Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| | ||| | || | ||| | ||||||||||| Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGGTAT 785465 Score = 123 bits (136), Expect = 4e-23 Identities = 166/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || ||| | ||| ||||| || | Sbjct 787053 ATGCAGATCTTCGTCAAGACTCTTACTGGAAAGACCATCACTCTGGAGGTTGAACCATCT 787112 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| || || |||||||| || ||||| || || || || Sbjct 787113 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGATAAGGAGGGTATCCC-CCAGACCAG 787171 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || ||||||||||||||| |||| || || || || ||| Sbjct 787172 CAGCGTCTTATCTTTGCTGGCAAACAATTAGAGGATGGTCGCACTTTGTCCGACTACAAT 787231 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||| | || | ||| | ||||||||||| Sbjct 787232 ATTCAAAAAGAATCCACCCTTCATCTTGTGCTCCGTCTGCGAGGTGGTAT 787281 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || |||||||| || ||| | || ||||| | | Sbjct 785008 ATGCAGATATTTGTCAAGACTCTTACTGGCAAAACCATCACTCTCGAAGTTGAACCTTCT 785067 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| || || ||||| |||||||| || || || || || Sbjct 785068 GACACAATTGAAAATGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 785127 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || || || || || ||| | || || | || || || Sbjct 785128 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACTCTTTCTGACTACAAC 785187 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | ||| | || | ||| | ||||||||||| Sbjct 785188 ATCCAGAAAGAATCCACACTACATCTTGTGCTCCGTCTGCGAGGTGGTAT 785237 Score = 100 bits (110), Expect = 4e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| || || ||| | ||| |||| | | Sbjct 786371 ATGCAGATTTTCGTTAAGACCCTTACTGGCAAGACCATCACTCTGGAGGTTGAGCCGTCT 786430 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || || |||||||| ||||| || || || || || Sbjct 786431 GACACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGCATCCC-CCAGACCAG 786489 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||| || || || || | || ||| | || ||||| ||||||||| Sbjct 786490 CAGCGTCTAATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTATAAC 786549 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| ||||| | ||| | || | ||| | ||||||||||| Sbjct 786550 ATCCAGAAAGAGTCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGGTAT 786599 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || |||| || | || || |||||||| || | || | || || Sbjct 784549 ACCATGCAGATTTTCGTAAAAACCTTGACGGGTAAAACTATTACGCTTGAAGTCGAGCCA 784608 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| | ||| |||||||||||||||||||| || || || ||| Sbjct 784609 TCCGACACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAGAT 784668 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | | || || |||||||| || || || || | || ||| | || || Sbjct 784669 CAGCAACGATTGATCTTCGCAGGAAAGCAGTTGGAAGACGGCCGCACACTGTCTGACTAC 784728 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||||||||| || | ||| | ||| | ||| | || || ||||| Sbjct 784729 AACATTCAAAAAGAATCCACCCTCCATCTTGTTCTGCGTCTCCGTGGCGGTAT 784781 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| ||||| ||||| || || ||||| || | | || || || || ||| Sbjct 784864 AAAATCCAAGACAAAGAGGGTATTCCCCCAGATCAGCAGCGATTGATCTTCGCTGGTAAA 784923 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||||||| |||| || | ||||||||| ||||| |||||||| || | || Sbjct 784924 CAATTAGAGGATGGTCGCACCCTCTCAGATTATAACATTCAGAAAGAATCGACCCTTCAC 784983 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || | ||||||||||| Sbjct 784984 CTTGTATTGCGACTCCGAGGTGGTAT 785009 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| | || ||||| ||||| ||| | ||| |||| | Sbjct 785464 ATGCAGATTTTCGTAAAGACCTTGACTGGCAAGACTATTACTCTGGAGGTTGAGCCTTCG 785523 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| || || || || || ||||| || || ||||| || Sbjct 785524 GATACTATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCC-CCTGACCAG 785582 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| |||||||| ||||| || | || || | || || ||| Sbjct 785583 CAGCGTCTCATCTTTGCCGGAAAACAGTTAGAAGACGGACGCACTCTTTCTGACTACAAT 785642 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||| | || | ||| | ||||||||||| Sbjct 785643 ATTCAAAAAGAATCCACCCTCCATCTTGTGCTCCGTCTGCGAGGTGGTAT 785692 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || ||| | ||| |||| | | Sbjct 786145 ATGCAGATTTTCGTTAAGACCCTTACTGG-AAGACCATCACTCTGGAGGTTGAGCCGTCT 786203 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || || |||||||| ||||| || || || || || Sbjct 786204 GACACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGCATCCC-CCAGACCAG 786262 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||| || || || || | || ||| | || ||||| ||||||||| Sbjct 786263 CAGCGTCTAATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTATAAC 786322 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| | ||| | || | ||| | ||||||||||| Sbjct 786323 ATCCAGAAAGAATCAACCCTTCATCTTGTGCTCCGTCTGCGAGGTGGTAT 786372 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || |||||||| || ||| | ||| ||||| | | Sbjct 786825 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAAACCATCACTCTTGAGGTTGAACCTTCT 786884 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || || || || ||||| || || ||||| || Sbjct 786885 GACACGATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 786944 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| || || || || || || || ||| | || || || || || || Sbjct 786945 CAGCGTCTTATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAAC 787004 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || |||| ||||| | ||| | ||||||||||| Sbjct 787005 ATCCAGAAAGAATCGACCCTGCACTTGGTGCTCCGTCTCCGAGGTGGTAT 787054 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| | || ||||| ||||| ||| | ||| |||| | Sbjct 787280 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACTATTACTCTGGAGGTTGAGCCTTCG 787339 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| || || || || || ||||| || || ||||| || Sbjct 787340 GATACTATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 787399 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| || || || || || || || || | || || | || || ||| Sbjct 787400 CAGCGTCTTATCTTCGCTGGCAAGCAGTTGGAAGACGGACGCACTCTTTCCGACTACAAT 787459 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||||| || |||| ||||| || ||| | || || || Sbjct 787460 ATTCAAAAAGAATCCACCCTGCACTTGGTCTTGCGTCTTCGTGGCGG 787506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755433374092800