Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1935 89.7 9e-13 seq1567 89.7 9e-13 seq291 89.7 9e-13 >seq1935 Length=217195 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 189417 AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGG 189476 ||||| | | ||| | || || || ||| || ||||| | | || || ||| | | Sbjct 139721 AACAATTAGCCAAATCAGAGACACACGATGACCTGTGGAATTCAGCCCAGATTCAGCTTG 139662 Query 189477 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAAT 189536 ||| |||||||| |||||| | ||| | || ||||| ||||| |||||||| ||||| | Sbjct 139661 TGAAGGAAGGAAAGATGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATCCTTGAGT 139602 Query 189537 GGACTAGAACACCTGAAGACGCTTTGA 189563 |||| |||||||||||| ||| ||| Sbjct 139601 GGACCCCAACACCTGAAGATGCTCTGA 139575 >seq1567 Length=349014 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 189417 AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGG 189476 ||||| | | ||| | || || || ||| || ||||| | | || || ||| | | Sbjct 24955 AACAATTAGCCAAATCAGAGACACACGATGACCTGTGGAATTCAGCCCAGATTCAGCTTG 25014 Query 189477 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAAT 189536 ||| |||||||| |||||| | ||| | || ||||| ||||| |||||||| ||||| | Sbjct 25015 TGAAGGAAGGAAAGATGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATCCTTGAGT 25074 Query 189537 GGACTAGAACACCTGAAGACGCTTTGA 189563 |||| |||||||||||| ||| ||| Sbjct 25075 GGACCCCAACACCTGAAGATGCTCTGA 25101 >seq291 Length=1704258 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 189417 AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGG 189476 ||||| | | ||| | || || || ||| || ||||| | | || || ||| | | Sbjct 283644 AACAATTAGCCAAATCAGAGACACACGATGACCTGTGGAATTCAGCCCAGATTCAGCTTG 283703 Query 189477 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAAT 189536 ||| |||||||| |||||| | ||| | || ||||| ||||| |||||||| ||||| | Sbjct 283704 TGAAGGAAGGAAAGATGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATCCTTGAGT 283763 Query 189537 GGACTAGAACACCTGAAGACGCTTTGA 189563 |||| |||||||||||| ||| ||| Sbjct 283764 GGACCCCAACACCTGAAGATGCTCTGA 283790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923169150255840