Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1001 102 1e-16 seq1732 98.7 1e-15 seq535 96.9 5e-15 >seq1001 Length=1503601 Score = 102 bits (112), Expect = 1e-16 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || ||||| |||||||||||||| ||||| || ||| | | || |||||||| Sbjct 1332673 AGCTGGTGTCATTGATGAAGATTATAGAGGTAATGTTGGTGTAGTCATCTTCAATCATTC 1332732 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 || |||| ||| |||| || | ||| |||||||| | ||| | || |||||| | || Sbjct 1332733 GGATCAAGAATTTGTAATCAACAAAGGTGATAGAATTGCCCAACTTATTTGTGAACAGAT 1332792 Query 10619 TTTATATCCTAAAATGTTAA--AAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTT 10676 | ||||| | | | || |||| || ||| || ||||| || || ||||| Sbjct 1332793 CTACTATCC--AGTTCTCAAAGAAGTAACTAATTTGTCTGAAACCAATAGGGCTGATGGA 1332850 Query 10677 GGTTTTGGATCTACTGG 10693 || |||||||| || || Sbjct 1332851 GGATTTGGATCAACAGG 1332867 >seq1732 Length=1186882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| |||| ||||| | || | || |||||||| || ||||||||||| Sbjct 785006 CCACCTCGGAGTCGCAATACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAG 784947 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| ||||||||||| ||||| || ||||||| |||||||| || ||| Sbjct 784946 AGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGGGGA 784887 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 784886 ATACCCTCTTTGTCTTG 784870 >seq535 Length=1858795 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||||| || ||||| | ||||||||||| |||||||| || | Sbjct 56744 TTCCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGG 56802 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTT-CCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 |||| || | || ||| || | ||| || || || || ||||||||||| || || || Sbjct 56803 AAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGT 56862 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| ||||| Sbjct 56863 GGAATTCCCTCTTTGTCTTG 56882 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||||| || ||||| | ||||||||||| |||||||| || | Sbjct 1714244 TTCCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGG 1714186 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTT-CCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 |||| || | || ||| || | ||| || || || || ||||||||||| || || || Sbjct 1714185 AAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGT 1714126 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| ||||| Sbjct 1714125 GGAATTCCCTCTTTGTCTTG 1714106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743504131384320