Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1772 109 5e-19 >seq1772 Length=243193 Score = 109 bits (120), Expect = 5e-19 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14531 ||| ||||| |||||||| ||| | ||||| |||||||||| || ||||| ||||||| Sbjct 41282 AATATATGTGTCAATAAG-AAGAGAGTACATCTCAGAGTGTACATTCTCCATGGCTATCT 41224 Query 14532 GAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCC 14590 | |||||||| || ||||||||||| | | ||| || || |||| | || | ||| || Sbjct 41223 GGAAACCATAGAAGCATCTAGCTTCAGTCACTTGAACTTCTTGAG-AGAAACGTTCAACC 41165 Query 14591 AAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14650 | |||||||| || || ||||| ||| ||||| || |||| | | || |||||| Sbjct 41164 AGGTTTTCATTGACAATCCCATCGGAAGCAGCAAAGAAAGCCAGCACATGCTTGATAAAG 41105 Query 14651 T 14651 | Sbjct 41104 T 41104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||| || ||||| || |||||||| || ||||| || || ||||||| Sbjct 41686 CCTCATCTCTAGATATCAGTTCATTACTGAATGTTAAACCAGGCATTAAACCACGTTTTT 41627 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || || | || || || || ||||| ||||| || ||||||||||| | Sbjct 41626 TCATCCAGAAAATGGAGGCAAAGCTGCCTGAGAAGAAAATTCCTTCGACTGCAGCAAATG 41567 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || | ||| || |||| | ||| ||| | ||||||| ||||| |||| Sbjct 41566 CGATAATTCGCTCAGCAAATGTTGCAGACTTGCTACCAATCCATTGCAGGGCCCAGTCAG 41507 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 || || || | | || | || |||||||||||||| Sbjct 41506 CCTTCTTCTTCACACAAGGGAGAGTCTCAATAGCATTAAA 41467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482331153749280