Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1843 185 7e-42 seq713 109 4e-19 seq1732 104 2e-17 seq535 95.1 9e-15 >seq1843 Length=1107702 Score = 185 bits (204), Expect = 7e-42 Identities = 627/965 (65%), Gaps = 19/965 (2%) Strand=Plus/Plus Query 90991 TAGTCAACGACTCCATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAAA 91050 ||||| || || ||||| | ||| || || |||| ||||| | || |||||| || Sbjct 491152 TAGTCCACCACACCATCCTGCCAAGTTCCTTTAACGGGACCAGTCGCTACACCAGTGAAC 491211 Query 91051 TAGTTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCA 91110 || || |||||||| | || || |||||||| || || ||||| || |||||| Sbjct 491212 GGATTGCCATCTTTGTAACCGTTGACTCCAGTCCAGCCTCGTCCATACATAGCAACACCA 491271 Query 91111 ATAATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCA-TTTG-CACGGCATGATGCG 91168 | | || || | | ||||||||| || | |||| ||| | | | | Sbjct 491272 ACGACAATCTTCTTGGGGCTAACACCTTGAGCCAACAGGAATTTGACACCGAAG--TCAG 491329 Query 91169 TGGTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAAT 91228 | ||||| ||| || ||||||||| |||||||| | | || | ||| || | Sbjct 491330 TTGTGTAAGTCTCCTTGGGGTTCCATGCTGGGGCGTACAAACCTGCCTGGTGGCC-AAGT 491388 Query 91229 CGGTATTT-GACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAAC 91287 || || |||||||| || || || || ||| |||| | | || | | || || Sbjct 491389 GTGTCGTTAGACCAAGCGCCCTTGAAGTCATAACTCATCAAGAAGATGTGATCCATGTAC 491448 Query 91288 TTTTGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTT 91347 | || || | | || || |||| | ||||||||| |||||| | ||| || Sbjct 491449 TGCTGAGCTTCTTTGTAGTCCACAACCTGGATCTTGTCCCAACCGGAGCTGATAGCAGAA 491508 Query 91348 GTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCT 91407 |||||||||||| ||||| || | || | || | |||||| | | | || Sbjct 491509 GTCAATTCGTACTTCTTACCAGTCTTGGCAGAAAGCTCGTTCAACATCTGTCTGAGTTCC 491568 Query 91408 TTTAGCAAAACAATGTATGTAGCAGCGTCGCGT-TTC-GGATCGCCAATGGCCGGATTAG 91465 || | || |||| |||| | | | ||| ||| || | || | | || || | Sbjct 491569 TTCATCAGC----TGTACGTAGATGTGAC-CGTCTTCAGGGGCACCGAGATCAGGGTTGG 491623 Query 91466 CGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTT 91525 | |||||||| || || |||||||||||||| || ||||| || || || ||||| || Sbjct 491624 CTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACACCATCGAAGAACTTCCAGGTTT 491683 Query 91526 GCAAAAATTCTTTAACCGAATCAACGAACACGTTTCTTCGTTTGACATCGTGCATAAAAT 91585 | || || || || ||| ||||||| || ||| || || |||| | ||| Sbjct 491684 CGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTC---TTCACTTCGTCAGTGAAAA 491740 Query 91586 AGAA---CGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGT 91642 |||| |||||| | || ||||| ||||| | || || || | || | | || Sbjct 491741 AGAAGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCAAGATCTTCAGGTCTGGTC 491800 Query 91643 TGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGG 91702 | || || ||| | || || ||||| |||||||||||||||||||| | | Sbjct 491801 TCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGTAAGGCTCGTTCCAGGATG 491860 Query 91703 ATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAAT 91762 | | ||| || ||||||||||| | || ||||| |||||||| || || || || |||| Sbjct 491861 ACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGTGGATAGATACCTTGAAAT 491920 Query 91763 CATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGG 91822 | || | || |||| |||| |||| | || ||||| || || || | Sbjct 491921 CTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACTGCCTTCGATCTCCTTCAAAC 491980 Query 91823 CATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAAT 91882 ||||| | ||||| ||||| || || || || ||||| |||| |||||| | | || Sbjct 491981 TGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCATACAGCAGATGAGTAAGAT 492040 Query 91883 TTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGT 91942 | || | ||||| ||| | || || || | | ||| || |||||||||||||||| Sbjct 492041 TGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTAGACACCCCATTCAACAAAGT 492100 Query 91943 ACGCG 91947 | ||| Sbjct 492101 AGGCG 492105 >seq713 Length=456993 Score = 109 bits (120), Expect = 4e-19 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 20152 AAACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCC 20211 |||||| | ||||||||||||||| || | ||||| || ||||||||||| | || || Sbjct 320469 AAACCACCTTGCGTGTTGTTCCCAGGGTACGTCATGGTTCTCCCAATCTTTTAATCCACC 320528 Query 20212 ATTGCAATAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGC 20271 || ||||||||||||| ||||| || || | || ||| |||| || || ||||| Sbjct 320529 ATCGCAATAAAAACACTTGGTTTTGTCTCCCTGACCAGTGTAA-AAAAGCCAGCCTCGGC 320587 Query 20272 CAATTCATCGGGCCTTTGCTTCATGCTGCGCGGCCACCCTTCAAAAGTTTTTAAACGCGC 20331 | ||| || || |||| ||||| || ||||| ||| |||| | || || || Sbjct 320588 GAGTTCTTCAGGTTTTTGTCGCATGCATCGTGGCCAGTCTTTAAAACTGCGTAGTCGTGC 320647 Query 20332 AGCTTCTGATGCATA 20346 ||||| |||||||| Sbjct 320648 GGCTTCAGATGCATA 320662 >seq1732 Length=1186882 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||||||||||||||||||||| | || ||| | |||||||| || Sbjct 784754 TGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAGTGTGCGGCCGTCTTCCAACTGC 784695 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||| | || ||| ||||| || | |||||| ||||| ||||| | Sbjct 784694 TTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTGAATTT-T 784636 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||||| |||||| ||||| || || |||| || || Sbjct 784635 AGCTTTAACATTTTCAATGGTGTCGGATGGCTCGACTTCAAGCGTAATAGTTTTACCCGT 784576 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| |||||||| ||||| ||||| Sbjct 784575 CAAGGTTTTTACGAAAATCTGCAT 784552 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 787036 AGCACCAAGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCT 786977 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || ||||| || ||||||| | || || || ||| | ||||||||| || Sbjct 786976 TCCAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 786917 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| |||||| || || |||| |||||| || Sbjct 786916 TGGATCTTGGCCTTCACATTTTCAATCGTGTCAGAAGGTTCAACCTCAAGAGTGATGGTT 786857 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| || || || ||||| Sbjct 786856 TTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 786825 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||||||||| || ||||| || || | || ||| | ||||||||||||| Sbjct 785438 TGGAGGGTTGATTCTTTCTGGATGTTATAATCTGACAAAGTTCGGCCATCTTCCAATTGT 785379 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| ||||||| | || || || ||| | || || || || ||||| Sbjct 785378 TTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGAATTTTG 785319 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| |||||| || || || | |||||| | || || ||| Sbjct 785318 GCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACCTCGAGAGTGATGGTCTTACCAGTC 785259 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| || ||||| Sbjct 785258 AAAGTTTTGACAAATATCTGCAT 785236 >seq535 Length=1858795 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||| || || || || |||||||||||||||| | ||| | |||||| Sbjct 57442 TACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTC 57501 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 || || || || || |||| |||| ||| || || || | || || || || Sbjct 57502 CAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGGATTCCCTCTTTGTCTTG 57561 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| | || ||||| | | ||| |||||| |||||| ||| | ||||| ||| Sbjct 57562 GATTT-TAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTTT 57620 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||| ||||| ||||| |||||||| Sbjct 57621 TACCAGTCAAGGTTTTGACAAAGATTTGCAT 57651 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||| || || || || |||||||||||||||| | ||| | |||||| Sbjct 1713546 TACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTC 1713487 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 || || || || || |||| |||| ||| || || || | || || || || Sbjct 1713486 CAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGGATTCCCTCTTTGTCTTG 1713427 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| | || ||||| | | ||| |||||| |||||| ||| | ||||| ||| Sbjct 1713426 GATTT-TAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTTT 1713368 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||| ||||| ||||| |||||||| Sbjct 1713367 TACCAGTCAAGGTTTTGACAAAGATTTGCAT 1713337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332922681020