Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1843 138 9e-28 seq1732 100 2e-16 >seq1843 Length=1107702 Score = 138 bits (152), Expect = 9e-28 Identities = 330/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 36356 GGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTC 36415 || ||||| ||||| || || || |||||||||||||| || | || ||||| || ||| Sbjct 491617 GGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACACCATCGAAGAACTTC 491676 Query 36416 CATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCG-CATC-GT 36473 || || | || || || || | || || |||| | ||| | | || || Sbjct 491677 CAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTC-TTCACTTCGTCAGT 491735 Query 36474 GCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGAT 36533 | | | || |||| || || | ||| ||||| || || | || | ||| | || || | Sbjct 491736 GAAAAAGA-AGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCAAGATCTTCAGGT 491794 Query 36534 TGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCC 36593 || | || ||| ||| ||||| || || || || ||||| || ||||||| Sbjct 491795 CTGGTCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGTAAGGCTCGTTCC 491854 Query 36594 ATGC-GCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACT 36652 | | | || ||| | |||||||||||||| || ||||| |||||||| || || || Sbjct 491855 AGGATGACAAACCCT-TCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGTGGATAGATACC 491913 Query 36653 TTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGAT 36712 || |||| |||||||| ||| ||||| |||| |||| ||||| || ||| Sbjct 491914 TTGAAATCTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACTGCCTTCGATCTCC 491973 Query 36713 TTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAATGTGC 36772 || ||||||||||| || || || || || || || || || || || || | | || Sbjct 491974 TTCAAACTGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCATACAGCAGATGA 492033 Query 36773 GAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATTCG 36832 | ||| || || ||||||| ||| ||||| || | ||| || |||||||| Sbjct 492034 GTAAGATTGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTAGACACCCCATTCA 492093 Query 36833 ACAAAATAGGC 36843 ||||| ||||| Sbjct 492094 ACAAAGTAGGC 492104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 212/321 (66%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||||| |||||||| ||||| || | | ||| || || | | || || Sbjct 491137 TTGGCAATCTCCCTGTAGTCCACCACACCATCCTGCCAAGTTCCTTTAACGGGACCAGTC 491196 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 ||||| ||| |||| |||||| || ||||| || ||| || ||||| || || || Sbjct 491197 GCTACACCAGTGAACGGATTGCCATCTTTGTAACCGTTGACTCCAGTCCAGCCTCGTCCA 491256 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| || || || | || | || || || | || | ||| || | || | Sbjct 491257 TACATAGCAACACCAACGACAATCTTCTTGGGGCTAACACCTTGAGCCAACAGGAATTTG 491316 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | || | ||||| | || || || ||||| || | |||||| | | | Sbjct 491317 ACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCATGCTGGGGCGTACAAACCTGCC 491376 Query 36113 TGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATT 36172 || || || || | ||||||||||| || ||||| ||||||||||||| ||| || Sbjct 491377 TGGTGGCCAAGTGTGTCGTTAGACCAAGCGCCCTTGAAGTCATAACTCATCAAGAAGATG 491436 Query 36173 TTATCTAAATACTGTTGTGCT 36193 | ||| | ||||| || ||| Sbjct 491437 TGATCCATGTACTGCTGAGCT 491457 >seq1732 Length=1186882 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| ||||| || || || || || || || |||| || ||| | Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| |||| |||||| | ||||| || | || ||||||| Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| ||||||||| |||||||| | ||| || ||||| | | Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| | || || ||| | ||| | || |||| || ||| Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGGT 785463 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| || || | || |||||||| || || |||| || ||| | Sbjct 785008 ATGCAGATATTTGTCAAGACTCTTACTGGCAAAACCATCACTCTCGAAGTTGAACCTTCT 785067 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| |||| || || | ||||||||| | || |||||| Sbjct 785068 GACACAATTGAAAATGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 785127 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| ||||| || |||||||| ||| | || |||| | Sbjct 785128 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACTCTTTCTGACTACAAC 785187 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| |||| || ||| | ||| | || |||| || ||| Sbjct 785188 ATCCAGAAAGAATCCACACTACATCTTGTGCTCCGTCTGCGAGGTGGT 785235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418291785000320