Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1835 589 2e-163 seq1057 589 2e-163 >seq1835 Length=830947 Score = 589 bits (652), Expect = 2e-163 Identities = 1205/1780 (68%), Gaps = 33/1780 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | || | ||| | ||||| ||| ||||||| || ||||| |||||| Sbjct 532618 TCAACGGTGAACTGAATTGCATTGGCTGCCGGTTTGGTTCTCAAGTAGTACATACCAGTT 532677 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| | |||| | |||||||| ||| || | ||| |||| | || | | Sbjct 532678 TTCAATCCCATTTTCCAAGCATAAAAATGAATAGATGTTAATTTACCGTAATTTGGTTCA 532737 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | ||||||||||| || ||||| ||||||||||| || |||||| Sbjct 532738 GCAACATGAATATTAAAAGATTGACTTTGGTCAATAAATGCACCTCTGTCAGCAGCCATT 532797 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || | |||| |||||| |||||||| |||||||| | | | | || | | Sbjct 532798 TGTATCGTTGTTTTTACAGATATTTCCCAAACTGTTTTATACAAATCTCTAATTTCTTTA 532857 Query 37030 GGTA---AATCTAAATGTTGAATAGAACCA---TTATGTAACA-CAATTGTATTCTTTAT 37082 |||| | || | | ||||||||| ||| ||||| | | ||| || || || Sbjct 532858 GGTATAGATTCAATGTTTTGAATAGATCCATTGTTATGAATGATCAA----GTTTTTCAT 532913 Query 37083 GTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 ||| | || ||| | || | | |||| || | ||| || |||| || ||||| Sbjct 532914 GTCCTCATCCCATAAATCAGCAACTGTTAGATCATGTAGTAGATGATGATTCACCACCTG 532973 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| || || || || || | |||| || || || || ||||||||| || || Sbjct 532974 AAACTCACCTGACAAAACACGTCTTTGGTAGATGTTAGATGTGAATGGTTCAAAAGATTC 533033 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 ||| || | ||||||||| | || || |||||||||||||| |||| | ||| ||| Sbjct 533034 ATTGTTTCCTAATATTTGGGCAGTGGAAGCAGTAGGCATTGGAGCTAACAAAAGCGAATT 533093 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| | |||||| | ||| ||| ||| || || || | ||||||||| || || Sbjct 533094 TCTGAGACCATGTTTTGCAATCTTCTCTTTCAG-GGATGCCCAGTCCATAAATCAGTAGG 533152 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 ||| |||||| || || |||| || || | ||| || ||| | | | |||||| Sbjct 533153 CACCTTGTTCCACATGTCGTACTGTAATATGCCCTGACTAGCAGGACTACCTTCATATGT 533212 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 ||| || ||| || | | ||||| ||| ||||| | ||||||||| ||||||| || Sbjct 533213 CTCGTACACTCCATACTTCTCAGCTAATTCACAACTTGCTTCTAGTGCACCATAATAAAT 533272 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||||| || || ||||||| | |||| |||| || || ||| || || Sbjct 533273 AGTTTCGAATATCTGCTGATTTAATTTAATTGCAGCTTCACTTTCATATGGTATGCGCAT 533332 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 |||| ||| ||||||| || || || || || || || |||||||| ||| || |||| Sbjct 533333 CAATACAAAGGCATCAGCTAAGCCTTGTACTCCAATTCCAATGGGTCTGTGTCTCATATT 533392 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 ||| | | ||| ||||| || ||||| | ||| || ||||| || ||||||| Sbjct 533393 TGATTTTTTAGCCTCTGGGACTGGGTAGTAATTCACATCAATAATTTTGTTCAGATTTTG 533452 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTT------GTCGAACATAAATACGTTATTATT 37676 || |||| |||| | | | ||||| || | || | | ||||| ||| Sbjct 533453 TGTTATAGTTTTAGTAACTTCTTTTAACTTTATAAAGTTGTACGT---TTTGTTATCATT 533509 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 ||||| || |||| | ||| ||| ||| |||||| || |||||||||||| | | Sbjct 533510 TACAAACATATTCAATGCAATTGATGCTAAATTACAAACTGCAACTTCATCTGATGAAGT 533569 Query 37737 AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATT 37796 | ||| | ||| || || || || ||||| || |||| || |||||||| ||||||| Sbjct 533570 ATATTCAACAATTTCAGTGCAAAGGTTACTGCATTTAATGGTGCCCAAATTTTTTTGATT 533629 Query 37797 GGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 |||| | || || ||||| || || || || || || ||||| ||| | || || Sbjct 533630 ACTTTTTCTGTTGCATGAATCCTTGTAGAGCATGTATGGTGTTCCGGTTTCAACCTGTGC 533689 Query 37857 CTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA-AtttttttCTT-T 37914 || || |||| |||||| ||| || ||| | || | | || | | ||| Sbjct 533690 TTCAATTATAGCTTTCCACAAAATTTGAGCTCTGAC--TTGTTTCACAAAACGGCCTTCA 533747 Query 37915 GTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGA 37974 |||| |||| ||| || | ||| || | ||||| || ||| ||| ||| Sbjct 533748 CTTTCATATTTCTCATACAAAGCCTCAAATTCTTCTCCCCAGCAGTCAGATAGTCCAGGA 533807 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 ||||| || ||||| | | ||| | || || |||| || | || ||| ||||| Sbjct 533808 CATTCATGGGGGCACATGATACTCCAGTTTTGATTAGTTTCCACTCTTTTCATGAATAAG 533867 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 ||||||| |||||| ||| ||| | ||| | | || |||||| || || ||| Sbjct 533868 TCAGGTATCCATAAAGCATAAAAGAGTTCTCTTGCTCGCACTTCTTCTTTACCAGTATTT 533927 Query 38095 TTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 ||| | || || || |||||||| ||||| ||||||||||||| |||||| | | Sbjct 533928 TTTTTCAAATCTAAGAATTCGAATATGTCAGCATGCCATGGTTCTAAATAAATAGCAAAA 533987 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 || || ||||| || | ||| || || | || ||| | | |||| ||||| || | |||| Sbjct 533988 GCACCAGGTCTCTTGTTACCACCTTGGTCAACATAGCGAGCTGTATTATTGTAGACTCTT 534047 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 ||||| || || | |||||| ||| ||| ||| |||| | || ||||||||||||| | Sbjct 534048 AACATTGGAACAAGACCATTTGATACGCCATTTGTACCAGCAATGTAAGTACCCTTAGAT 534107 Query 38275 CGTATATTACTTATCGAC----AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCA 38330 | || ||| | ||| | ||| || || || || ||| || || | ||| || Sbjct 534108 C---TAATAC-AGTGGACATGAAGTCCAATCCCTCCAGCTGATTTAGAAATGAGAGCACA 534163 Query 38331 TTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 |||||||| |||||| | || ||||| || |||||||| || |||| | | ||||| Sbjct 534164 TTGTTTTAGGGTATCATAAATCCCTTCAATGCTGTCATCTTTCATTGCAATGAGGAAACA 534223 Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 | ||| | |||||| || ||| | || |||| || || ||||||| |||| Sbjct 534224 AGAAGATAATTGAGGACGAGGTGTTGCAGCTGAGAATAGAGTTGGGCTTGCATGTGTGAA 534283 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 ||||||| |||| |||| ||||| | ||| || |||| ||||| | || ||||| Sbjct 534284 ATATTTTTCAGACAGCAAATTGTATGTATTTATGGCAGCATCAATATCCTCACCATGAAT 534343 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || | ||| || | ||| ||||| || ||||| |||||| Sbjct 534344 GCCAATAGAAACTCGCATCAGCATGTGCTGTGGCCTTTCT 534383 >seq1057 Length=1009321 Score = 589 bits (652), Expect = 2e-163 Identities = 1205/1780 (68%), Gaps = 33/1780 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | || | ||| | ||||| ||| ||||||| || ||||| |||||| Sbjct 688037 TCAACGGTGAACTGAATTGCATTGGCTGCCGGTTTGGTTCTCAAGTAGTACATACCAGTT 687978 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| | |||| | |||||||| ||| || | ||| |||| | || | | Sbjct 687977 TTCAATCCCATTTTCCAAGCATAAAAATGAATAGATGTTAATTTACCGTAATTTGGTTCA 687918 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | ||||||||||| || ||||| ||||||||||| || |||||| Sbjct 687917 GCAACATGAATATTAAAAGATTGACTTTGGTCAATAAATGCACCTCTGTCAGCAGCCATT 687858 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || | |||| |||||| |||||||| |||||||| | | | | || | | Sbjct 687857 TGTATCGTTGTTTTTACAGATATTTCCCAAACTGTTTTATACAAATCTCTAATTTCTTTA 687798 Query 37030 GGTA---AATCTAAATGTTGAATAGAACCA---TTATGTAACA-CAATTGTATTCTTTAT 37082 |||| | || | | ||||||||| ||| ||||| | | ||| || || || Sbjct 687797 GGTATAGATTCAATGTTTTGAATAGATCCATTGTTATGAATGATCAA----GTTTTTCAT 687742 Query 37083 GTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 ||| | || ||| | || | | |||| || | ||| || |||| || ||||| Sbjct 687741 GTCCTCATCCCATAAATCAGCAACTGTTAGATCATGTAGTAGATGATGATTCACCACCTG 687682 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| || || || || || | |||| || || || || ||||||||| || || Sbjct 687681 AAACTCACCTGACAAAACACGTCTTTGGTAGATGTTAGATGTGAATGGTTCAAAAGATTC 687622 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 ||| || | ||||||||| | || || |||||||||||||| |||| | ||| ||| Sbjct 687621 ATTGTTTCCTAATATTTGGGCAGTGGAAGCAGTAGGCATTGGAGCTAACAAAAGCGAATT 687562 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| | |||||| | ||| ||| ||| || || || | ||||||||| || || Sbjct 687561 TCTGAGACCATGTTTTGCAATCTTCTCTTTCAG-GGATGCCCAGTCCATAAATCAGTAGG 687503 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 ||| |||||| || || |||| || || | ||| || ||| | | | |||||| Sbjct 687502 CACCTTGTTCCACATGTCGTACTGTAATATGCCCTGACTAGCAGGACTACCTTCATATGT 687443 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 ||| || ||| || | | ||||| ||| ||||| | ||||||||| ||||||| || Sbjct 687442 CTCGTACACTCCATACTTCTCAGCTAATTCACAACTTGCTTCTAGTGCACCATAATAAAT 687383 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||||| || || ||||||| | |||| |||| || || ||| || || Sbjct 687382 AGTTTCGAATATCTGCTGATTTAATTTAATTGCAGCTTCACTTTCATATGGTATGCGCAT 687323 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 |||| ||| ||||||| || || || || || || || |||||||| ||| || |||| Sbjct 687322 CAATACAAAGGCATCAGCTAAGCCTTGTACTCCAATTCCAATGGGTCTGTGTCTCATATT 687263 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 ||| | | ||| ||||| || ||||| | ||| || ||||| || ||||||| Sbjct 687262 TGATTTTTTAGCCTCTGGGACTGGGTAGTAATTCACATCAATAATTTTGTTCAGATTTTG 687203 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTT------GTCGAACATAAATACGTTATTATT 37676 || |||| |||| | | | ||||| || | || | | ||||| ||| Sbjct 687202 TGTTATAGTTTTAGTAACTTCTTTTAACTTTATAAAGTTGTACGT---TTTGTTATCATT 687146 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 ||||| || |||| | ||| ||| ||| |||||| || |||||||||||| | | Sbjct 687145 TACAAACATATTCAATGCAATTGATGCTAAATTACAAACTGCAACTTCATCTGATGAAGT 687086 Query 37737 AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATT 37796 | ||| | ||| || || || || ||||| || |||| || |||||||| ||||||| Sbjct 687085 ATATTCAACAATTTCAGTGCAAAGGTTACTGCATTTAATGGTGCCCAAATTTTTTTGATT 687026 Query 37797 GGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 |||| | || || ||||| || || || || || || ||||| ||| | || || Sbjct 687025 ACTTTTTCTGTTGCATGAATCCTTGTAGAGCATGTATGGTGTTCCGGTTTCAACCTGTGC 686966 Query 37857 CTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA-AtttttttCTT-T 37914 || || |||| |||||| ||| || ||| | || | | || | | ||| Sbjct 686965 TTCAATTATAGCTTTCCACAAAATTTGAGCTCTGAC--TTGTTTCACAAAACGGCCTTCA 686908 Query 37915 GTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGA 37974 |||| |||| ||| || | ||| || | ||||| || ||| ||| ||| Sbjct 686907 CTTTCATATTTCTCATACAAAGCCTCAAATTCTTCTCCCCAGCAGTCAGATAGTCCAGGA 686848 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 ||||| || ||||| | | ||| | || || |||| || | || ||| ||||| Sbjct 686847 CATTCATGGGGGCACATGATACTCCAGTTTTGATTAGTTTCCACTCTTTTCATGAATAAG 686788 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 ||||||| |||||| ||| ||| | ||| | | || |||||| || || ||| Sbjct 686787 TCAGGTATCCATAAAGCATAAAAGAGTTCTCTTGCTCGCACTTCTTCTTTACCAGTATTT 686728 Query 38095 TTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 ||| | || || || |||||||| ||||| ||||||||||||| |||||| | | Sbjct 686727 TTTTTCAAATCTAAGAATTCGAATATGTCAGCATGCCATGGTTCTAAATAAATAGCAAAA 686668 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 || || ||||| || | ||| || || | || ||| | | |||| ||||| || | |||| Sbjct 686667 GCACCAGGTCTCTTGTTACCACCTTGGTCAACATAGCGAGCTGTATTATTGTAGACTCTT 686608 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 ||||| || || | |||||| ||| ||| ||| |||| | || ||||||||||||| | Sbjct 686607 AACATTGGAACAAGACCATTTGATACGCCATTTGTACCAGCAATGTAAGTACCCTTAGAT 686548 Query 38275 CGTATATTACTTATCGAC----AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCA 38330 | || ||| | ||| | ||| || || || || ||| || || | ||| || Sbjct 686547 C---TAATAC-AGTGGACATGAAGTCCAATCCCTCCAGCTGATTTAGAAATGAGAGCACA 686492 Query 38331 TTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 |||||||| |||||| | || ||||| || |||||||| || |||| | | ||||| Sbjct 686491 TTGTTTTAGGGTATCATAAATCCCTTCAATGCTGTCATCTTTCATTGCAATGAGGAAACA 686432 Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 | ||| | |||||| || ||| | || |||| || || ||||||| |||| Sbjct 686431 AGAAGATAATTGAGGACGAGGTGTTGCAGCTGAGAATAGAGTTGGGCTTGCATGTGTGAA 686372 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 ||||||| |||| |||| ||||| | ||| || |||| ||||| | || ||||| Sbjct 686371 ATATTTTTCAGACAGCAAATTGTATGTATTTATGGCAGCATCAATATCCTCACCATGAAT 686312 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || | ||| || | ||| ||||| || ||||| |||||| Sbjct 686311 GCCAATAGAAACTCGCATCAGCATGTGCTGTGGCCTTTCT 686272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468510767682240