Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1772 114 1e-20 >seq1772 Length=243193 Score = 114 bits (126), Expect = 1e-20 Identities = 165/226 (73%), Gaps = 10/226 (4%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14199 ||| ||||| |||||||| ||| | ||||| |||||||||| || ||||| ||||||| Sbjct 41282 AATATATGTGTCAATAAG-AAGAGAGTACATCTCAGAGTGTACATTCTCCATGGCTATCT 41224 Query 14200 GAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCC 14258 | |||||||| |||||||||||||| | | ||| ||||| ||| | || | ||| || Sbjct 41223 GGAAACCATAGAAGCATCTAGCTTCAGTCACTTGAACTTCTTGAG-AGAAACGTTCAACC 41165 Query 14259 AAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14318 | |||||||| || || ||||| ||| ||||| || |||| | | || |||||| Sbjct 41164 AGGTTTTCATTGACAATCCCATCGGAAGCAGCAAAGAAAGCCAGCACATGCTTGATAAAG 41105 Query 14319 TATTGCTCTTCATTG---TTGAGTTTTTTCCAATCGGATAAATCCT 14361 ||| ||| || || || | | ||| || |||||||||| Sbjct 41104 ---TGCCTCTCACTGTCCTTTAGAGTCTCCCAGTCTGATAAATCCT 41062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| || ||||| || |||||||| || ||||| || || ||||||| Sbjct 41686 CCTCATCTCTAGATATCAGTTCATTACTGAATGTTAAACCAGGCATTAAACCACGTTTTT 41627 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || | ||||| || || ||||| ||||| || ||||||||||| | Sbjct 41626 TCATCCAGAAAATGGAGGCAAAGCTGCCTGAGAAGAAAATTCCTTCGACTGCAGCAAATG 41567 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | || | ||| || |||| | ||| ||| | ||||||| ||||| |||| Sbjct 41566 CGATAATTCGCTCAGCAAATGTTGCAGACTTGCTACCAATCCATTGCAGGGCCCAGTCAG 41507 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 || || || | | || | || |||||||||||||| Sbjct 41506 CCTTCTTCTTCACACAAGGGAGAGTCTCAATAGCATTAAA 41467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479713632146400