Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1772 109 5e-19 >seq1772 Length=243193 Score = 109 bits (120), Expect = 5e-19 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 ||| ||||| |||||||| ||| | ||||| |||||||||| || || || ||||||| Sbjct 41282 AATATATGTGTCAATAAG-AAGAGAGTACATCTCAGAGTGTACATTCTCCATGGCTATCT 41224 Query 13988 GAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCC 14046 | |||||||| || ||||||||||| | | ||| || || ||| | || | ||| || Sbjct 41223 GGAAACCATAGAAGCATCTAGCTTCAGTCACTTGAACTTCTTGAG-AGAAACGTTCAACC 41165 Query 14047 AAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14106 | ||||||||| ||||| ||||| ||| ||||| || |||| | | || |||||| Sbjct 41164 AGGTTTTCATTGACAATCCCATCGGAAGCAGCAAAGAAAGCCAGCACATGCTTGATAAAG 41105 Query 14107 T 14107 | Sbjct 41104 T 41104 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||| || ||||| || |||||||| || ||||| || || ||||||| Sbjct 41686 CCTCATCTCTAGATATCAGTTCATTACTGAATGTTAAACCAGGCATTAAACCACGTTTTT 41627 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || || | || || || || ||||| ||||| || ||||||||||| | Sbjct 41626 TCATCCAGAAAATGGAGGCAAAGCTGCCTGAGAAGAAAATTCCTTCGACTGCAGCAAATG 41567 Query 13802 CTATTAGTCGTTCTCCAAACGATGC 13826 | || | ||| || |||| | ||| Sbjct 41566 CGATAATTCGCTCAGCAAATGTTGC 41542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478574466265440